当前解析结果
SmilChr03G000255| 统一新 Gene ID | SmilChr03G000255 |
|---|---|
| 名称 | SmilChr03G000255 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2998412 - 3001481 / - |
| NCBI Gene ID | LOC131016807 |
|---|---|
| GeneID | 131016807 |
| locus_tag | - |
| NCBI Name | LOC131016807 |
| 原始查询 | SmilChr03G000255 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=26.8; qcov=0.883; evalue=5.1e-64; confidence=low |
| Rice | Os07g0186500- identity=29.4; qcov=0.906; evalue=2.86e-77; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016807 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801532.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801532.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057801532.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801532.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801532.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2998543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B105,B58,C59,C86 |
Chr3:2998548 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C41 |
Chr3:2998548 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C41 |
Chr3:2998597 |
T |
TTC |
2bp_insertion | frameshift_variant | 3 | A7,B26,B83 |
Chr3:2998597 |
T |
TTC |
2bp_insertion | CDS_variant | 3 | A7,B26,B83 |
Chr3:2998598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B26,B83 |
Chr3:2998615 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | A6,C7 |
Chr3:2998615 |
A |
AG |
1bp_insertion | CDS_variant | 2 | A6,C7 |
Chr3:2998622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A3,B26,B83 |
Chr3:2998623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:2998675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,D9 |
Chr3:2998688 |
C |
CA |
1bp_insertion | frameshift_variant | 35 | A2,A21,A3,B100,B102,B104,B105,B107,B127,B13,B2,B26,B31,B33,B40,B45,B47,B53,B58,B66,B67,B7,B81,B84,C24,C29,C31,C51,C59,C65,C68,C69,C83,C86,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801532.1PF00931
NB-ARC 182-345 aa
PF23559
WHD_DRP 430-500 aa
PF23598
LRR_14 553-756 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801532.1 |
Pfam | PF00931 |
NB-ARC | Domain | 182 | 345 | 8e-38 | 130.4 | NB-ARC domain |
XP_057801532.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 500 | 5.7e-18 | 65.4 | Disease resistance protein Winged helix domain |
XP_057801532.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 553 | 756 | 1.3e-18 | 67.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。