当前解析结果
SmilChr03G000258| 统一新 Gene ID | SmilChr03G000258 |
|---|---|
| 名称 | SmilChr03G000258 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3019405 - 3042594 / + |
| NCBI Gene ID | LOC131016792 |
|---|---|
| GeneID | 131016792 |
| locus_tag | - |
| NCBI Name | LOC131016792 |
| 原始查询 | SmilChr03G000258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=32.7; qcov=0.697; evalue=4.19e-70; confidence=low |
| Rice | Os07g0186500- identity=32.9; qcov=0.706; evalue=2.84e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016792 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801508.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801506.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801506.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801506.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801506.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3019700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,A24,C61 |
Chr3:3019766 |
T |
TCA |
2bp_insertion | frameshift_variant | 8 | A11,B124,B129,B44,B93,C13,C48,C72 |
Chr3:3019786 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A10,B84,C54,C58,C80,C84 |
Chr3:3019814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B20,C18 |
Chr3:3019867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,B59,C87 |
Chr3:3019893 |
A |
ATT |
2bp_insertion | frameshift_variant | 1 | B122 |
Chr3:3019893 |
A |
ATT |
2bp_insertion | CDS_variant | 1 | B122 |
Chr3:3019945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B4,B81,C9 |
Chr3:3019957 |
GAA |
G |
2bp_deletion | frameshift_variant | 3 | B28,B83,C49 |
Chr3:3019957 |
GAA |
G |
2bp_deletion | CDS_variant | 3 | B28,B83,C49 |
Chr3:3019999 |
A |
ATC |
2bp_insertion | frameshift_variant | 7 | B10,B110,B133,B28,B83,C49,C59 |
Chr3:3020001 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801506.1PF00931
NB-ARC 296-463 aa
PF23559
WHD_DRP 547-618 aa
PF23598
LRR_14 671-905 aa
XP_057801507.1PF00931
NB-ARC 296-463 aa
PF23559
WHD_DRP 547-618 aa
PF23598
LRR_14 671-905 aa
XP_057801508.1PF00931
NB-ARC 296-463 aa
PF23559
WHD_DRP 547-618 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801506.1 |
Pfam | PF00931 |
NB-ARC | Domain | 296 | 463 | 1.8e-41 | 142.3 | NB-ARC domain |
XP_057801506.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 547 | 618 | 3.9e-21 | 75.6 | Disease resistance protein Winged helix domain |
XP_057801506.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 671 | 905 | 1.5e-19 | 70.7 | Leucine-rich repeat region |
XP_057801507.1 |
Pfam | PF00931 |
NB-ARC | Domain | 296 | 463 | 1.8e-41 | 142.3 | NB-ARC domain |
XP_057801507.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 547 | 618 | 3.9e-21 | 75.6 | Disease resistance protein Winged helix domain |
XP_057801507.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 671 | 905 | 1.5e-19 | 70.7 | Leucine-rich repeat region |
XP_057801508.1 |
Pfam | PF00931 |
NB-ARC | Domain | 296 | 463 | 8.4e-42 | 143.4 | NB-ARC domain |
XP_057801508.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 547 | 618 | 2.4e-21 | 76.3 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。