Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000263`

染色体: Chr03 坐标: 3052567-3055958 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000263`
名称	SmilChr03G000263
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3052567 - 3055958 / `-`

ID 对照

NCBI Gene ID	`LOC131016811`
GeneID	`131016811`
locus_tag	`-`
NCBI Name	`LOC131016811`
原始查询	`SmilChr03G000263`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.6; qcov=1.01; evalue=4.66e-58; confidence=low
Rice	`Os07g0186500` - identity=30.4; qcov=0.92; evalue=5.78e-83; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801537.1`
2	Cytoplasm	细胞质	0.40000	`XP_057801536.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801537.1`
4	Nucleus	细胞核	0.00000	`XP_057801537.1`
5	Chromosome	染色体	0.00000	`XP_057801537.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3052654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B4
`Chr3:3052666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B54,B9,C22,C26
`Chr3:3052681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:3052682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:3052686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:3052693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:3052701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C18,C36
`Chr3:3052714`	`AC`	`A`	1bp_deletion	frameshift_variant	2	C18,C36
`Chr3:3052714`	`AC`	`A`	1bp_deletion	CDS_variant	2	C18,C36
`Chr3:3052716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B134
`Chr3:3052717`	`T`	`TGC`	2bp_insertion	frameshift_variant	2	C18,C36
`Chr3:3052717`	`T`	`TGC`	2bp_insertion	CDS_variant	2	C18,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801536.1

894 aa

447

894

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 180-343 aa PF23559 WHD_DRP 429-499 aa PF23598 LRR_14 551-747 aa

XP_057801537.1

754 aa

377

754

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 40-203 aa PF23559 WHD_DRP 289-359 aa PF23598 LRR_14 411-607 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801536.1`	Pfam	`PF00931`	NB-ARC	Domain	180	343	1.8e-40	139.0	NB-ARC domain
`XP_057801536.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	2.6e-17	63.3	Disease resistance protein Winged helix domain
`XP_057801536.1`	Pfam	`PF23598`	LRR_14	Repeat	551	747	4.9e-20	72.3	Leucine-rich repeat region
`XP_057801537.1`	Pfam	`PF00931`	NB-ARC	Domain	40	203	1.4e-40	139.4	NB-ARC domain
`XP_057801537.1`	Pfam	`PF23559`	WHD_DRP	Domain	289	359	1.8e-17	63.8	Disease resistance protein Winged helix domain
`XP_057801537.1`	Pfam	`PF23598`	LRR_14	Repeat	411	607	3.2e-20	72.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945553.1
TTTGTTGCTGAATTCCCTTGTGTTTCAATATGTTTAGGCGGATCCTGACATGTACTTCAGGATTTAAAAAAAAAAGGAAAAAAAAGTCAATTAGATTCAAACAAAACAAAATATGACAACTTTCCCAACTTGCAATTTTTGTTTTTTTTTTTTTTTCAAAATTCCATATTTTATATACCAACTTGACGACTTGCATGTTGTTTTCTAAATTAATCTTGTACAAATCTACCCACTGTCTTCAACCTATTCGGAAATTTCAA...

XM_057945554.1
GTTATAAGTCCCCTGTTGCTGACGGAGATGAATCTGATCCGCTGGAGATGCGTATTGTAGATGCAGCTCATGCGGTTGAAGATGTTATCGAATCATATATTGTGAACGTGATTGAACTGGGAATTTCTCCAAGGCTATGTTGTAGATGCAGCTCATGCGGCTGAAGAAGTGAATTCTAGAGAGGAAGTCAGTTGCATCGACTTCTATCAAGATCTACAGCAAGTGATTGAAGAACTGAATGTGATCAAGAAGGAAGCCAT...

CDS

2 records

下载 CDS FASTA

LOC131016811
ATGGCGGCATATGCAGCCTTGGTTTCTGTTATACATATCATCGATACAATCGAGCATCACCATTCCCCTCCAATTTCTATAGACAAACAACAAGTTGAATCTCTCACTCAAATTCTTACCTTTTTGCAGGAATTTCTTGAAGGTTATAAGTCCCCTGTTGCTGACGGAGATGAATCTGATCCGCTGGAGATGCGTATTGTAGATGCAGCTCATGCGGTTGAAGATGTTATCGAATCATATATTGTGAACGTGATTGAACT...

LOC131016811
ATGGAGACTTCAGCTGAAGCTCATCTGCAGAGAAAGGTCTCCTCGACTCATGCTGGCTCCTTGAGGTCCTCTTCCACTGTGAAGGAAAGCATGATGGTGGGCTTTGATGATGTGTTACTTCAACTCTTGGATAAGCTCACTGGAGGGCACCGCAATCGCCAAATCATCCCTATTGTTGGGATGGGCGGGATTGGTAAGACCACTCTTGCCCGACATATATTTGAGCATGCCCTTGTTAAGGAGCATTTTGATCTTTGTGC...

Protein

2 records

下载 Protein FASTA

XP_057801536.1
MAAYAALVSVIHIIDTIEHHHSPPISIDKQQVESLTQILTFLQEFLEGYKSPVADGDESDPLEMRIVDAAHAVEDVIESYIVNVIELGRSSSNEEFLQGYVVDAAHAAEEVNSREEVSCIDFYQDLQQVIEELNVIKKEAMETSAEAHLQRKVSSTHAGSLRSSSTVKESMMVGFDDVLLQLLDKLTGGHRNRQIIPIVGMGGIGKTTLARHIFEHALVKEHFDLCAWTTISQTYNVRETLREVLYQVSGDSRDDLSDEN...

XP_057801537.1
METSAEAHLQRKVSSTHAGSLRSSSTVKESMMVGFDDVLLQLLDKLTGGHRNRQIIPIVGMGGIGKTTLARHIFEHALVKEHFDLCAWTTISQTYNVRETLREVLYQVSGDSRDDLSDENELGEKLHKYLLGRRYIIILDDMWSVEVWYKMRFFFPDYNDGSRVIVTTRLSNLAAEVTDSNSIGMRFLDDVYSWSLFSKTVFGDEGFPLHLEEIGKKIVGKCKGLPLSIVVIGGLLAKSELTLEYWEHIEENLSSTVNSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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