当前解析结果
SmilChr03G000269| 统一新 Gene ID | SmilChr03G000269 |
|---|---|
| 名称 | SmilChr03G000269 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3100105 - 3104831 / - |
| NCBI Gene ID | LOC131015803 |
|---|---|
| GeneID | 131015803 |
| locus_tag | - |
| NCBI Name | LOC131015803 |
| 原始查询 | SmilChr03G000269 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=26; qcov=0.806; evalue=1.76e-54; confidence=low |
| Rice | Os07g0186500- identity=29.7; qcov=0.724; evalue=1.14e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015803 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057800209.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057800209.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057800209.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800209.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800209.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3100106 |
CA |
C |
1bp_deletion | frameshift_variant | 16 | B120,B121,B126,B19,B20,B21,B27,B34,B40,B42,B65,B94,C4,C57,C59,D5 |
Chr3:3100109 |
TTA |
T |
2bp_deletion | frameshift_variant | 10 | A18,A19,A9,B107,B46,B74,B95,C58,C61,C80 |
Chr3:3100135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B86 |
Chr3:3100140 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A22,B14,C10,C5,C65,C76,C83 |
Chr3:3100193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B138,B40,C49,C69 |
Chr3:3100197 |
AAT |
* |
2bp_deletion | CDS_variant | 5 | B117,B68,B87,C31,C72 |
Chr3:3100219 |
GA |
G |
1bp_deletion | frameshift_variant | 17 | A14,B12,B138,B17,B29,B48,B52,B60,B90,B92,C35,C38,C4,C41,C50,C67,C70 |
Chr3:3100221 |
GGT |
G |
2bp_deletion | frameshift_variant | 36 | A15,A25,A8,B100,B103,B110,B111,B122,B13,B135,B138,B139,B22,B23,B26,B33,B49,B50,B53,B59,B63,B68,B73,B8,B80,B81,B98,C30,C49,C59,C68,C75,C83,D4,D6,D8 |
Chr3:3100224 |
T |
TGA |
2bp_insertion | frameshift_variant | 34 | A15,A25,A8,B100,B103,B111,B122,B13,B135,B138,B139,B22,B23,B26,B33,B49,B50,B53,B59,B63,B68,B73,B8,B80,B81,B98,C30,C49,C59,C75,C83,D4,D6,D8 |
Chr3:3100225 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A23,C12 |
Chr3:3100225 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A23,C12 |
Chr3:3100232 |
T |
TCA |
2bp_insertion | frameshift_variant | 1 | B102 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800209.1PF00931
NB-ARC 305-468 aa
PF23559
WHD_DRP 553-604 aa
PF23598
LRR_14 633-829 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800209.1 |
Pfam | PF00931 |
NB-ARC | Domain | 305 | 468 | 8.3e-40 | 136.9 | NB-ARC domain |
XP_057800209.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 553 | 604 | 1e-11 | 45.4 | Disease resistance protein Winged helix domain |
XP_057800209.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 633 | 829 | 1.4e-20 | 74.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。