当前解析结果
SmilChr03G000284| 统一新 Gene ID | SmilChr03G000284 |
|---|---|
| 名称 | SmilChr03G000284 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3241316 - 3243560 / - |
| NCBI Gene ID | LOC131015810 |
|---|---|
| GeneID | 131015810 |
| locus_tag | - |
| NCBI Name | LOC131015810 |
| 原始查询 | SmilChr03G000284 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=31.9; qcov=0.936; evalue=3.24e-70; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=32; qcov=0.938; evalue=1.92e-79; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015810 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800215.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800215.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800215.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800215.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800215.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3241366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B132,B89,B90,B92 |
Chr3:3241407 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr3:3241411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C11,D2 |
Chr3:3241439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,C62,C78 |
Chr3:3241453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:3241505 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B81 |
Chr3:3241505 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B81 |
Chr3:3241515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C62 |
Chr3:3241536 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | C15,C2 |
Chr3:3241536 |
AG |
A |
1bp_deletion | CDS_variant | 2 | C15,C2 |
Chr3:3241563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C2 |
Chr3:3241564 |
CT |
C |
1bp_deletion | frameshift_variant | 8 | B1,B24,B54,B86,C11,C39,C5,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800215.1PF00931
NB-ARC 46-219 aa
PF23559
WHD_DRP 300-372 aa
PF23598
LRR_14 426-592 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800215.1 |
Pfam | PF00931 |
NB-ARC | Domain | 46 | 219 | 8.6e-44 | 149.9 | NB-ARC domain |
XP_057800215.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 300 | 372 | 3.3e-18 | 66.2 | Disease resistance protein Winged helix domain |
XP_057800215.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 426 | 592 | 1.1e-12 | 48.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。