当前解析结果
SmilChr03G000292| 统一新 Gene ID | SmilChr03G000292 |
|---|---|
| 名称 | SmilChr03G000292 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3337044 - 3340992 / - |
| NCBI Gene ID | LOC131018098 |
|---|---|
| GeneID | 131018098 |
| locus_tag | - |
| NCBI Name | LOC131018098 |
| 原始查询 | SmilChr03G000292 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT3G50950 (ZAR1)HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=29.1; qcov=0.886; evalue=2.99e-60; confidence=low |
| Rice | Os11g0633500- identity=34.9; qcov=0.437; evalue=2.03e-61; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018098 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057802804.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057802804.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802804.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802804.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802804.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3337086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:3337180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B31,B65,B72,C20,C6 |
Chr3:3337221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C31 |
Chr3:3337226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C31 |
Chr3:3338942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr3:3338944 |
C |
CGA |
2bp_insertion | frameshift_variant | 10 | A5,B114,B3,B44,B54,B57,B62,C47,C53,C84 |
Chr3:3338945 |
TGC |
T |
2bp_deletion | frameshift_variant | 10 | A5,B114,B3,B44,B54,B57,B62,C47,C53,C84 |
Chr3:3338960 |
TCA |
T |
2bp_deletion | frameshift_variant | 95 | A11,A13,A14,A16,A19,A21,A25,A3,A4,A6,A7,A9,B10,B103,B107,B109,B11,B111,B112,B115,B119,B121,B122,B125,B126,B127,B128,B13,B140,B15,B18,B21,B22,B32,B34,B36,B40,B41,B45,B53,B6,B64,B65,B7,B72,B73,B77,B8,B81,B83,B86,B88,B90,B92,B93,B94,B98,B99,C1,C11,C17,C18,C19,C22,C23,C26,C27,C30,C36,C39,C42,C43,C44,C49,C5,C52,C53,C55,C57,C58,C59,C61,C63,C64,C65,C71,C74,C75,C77,C82,C87,D10,D2,D3,D8 |
Chr3:3338964 |
A |
ACG |
2bp_insertion | frameshift_variant | 17 | A9,B10,B119,B125,B13,B32,B41,B45,B64,B81,B94,B98,C55,C57,C74,C87,D8 |
Chr3:3338983 |
ATG |
* |
2bp_deletion | CDS_variant | 3 | A16,B103,B109 |
Chr3:3338988 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B94,D8 |
Chr3:3338988 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B94,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802804.1PF00931
NB-ARC 1-144 aa
PF23559
WHD_DRP 231-302 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802804.1 |
Pfam | PF00931 |
NB-ARC | Domain | 1 | 144 | 7.7e-36 | 124.0 | NB-ARC domain |
XP_057802804.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 231 | 302 | 6.8e-15 | 55.6 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。