Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000303`

染色体: Chr03 坐标: 3457797-3463241 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000303`
名称	SmilChr03G000303
描述	uncharacterized SmilChr03G000303
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3457797 - 3463241 / `+`

ID 对照

NCBI Gene ID	`LOC131018106`
GeneID	`131018106`
locus_tag	`-`
NCBI Name	`LOC131018106`
原始查询	`SmilChr03G000303`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0191000; species=rice; confidence=low
产物	hit=Os04g0191000; species=rice; confidence=low
Arabidopsis	`ATMG00860` - identity=37.1; qcov=0.074; evalue=1.85e-19; confidence=weak
Rice	`Os04g0191000` - identity=29.2; qcov=0.494; evalue=2.35e-89; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2)
InterPro	-
eggNOG	-
NR	GeneID:131018106

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057802812.1`
2	Nucleus	细胞核	0.60000	`XP_057802812.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057802812.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057802812.1`
5	Chromosome	染色体	0.00000	`XP_057802812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3457803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B66,B86
`Chr3:3457816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:3457819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,B20,C81
`Chr3:3457837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B117,B55,B86
`Chr3:3457839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B64,B80,B84
`Chr3:3457853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C27
`Chr3:3457867`	`A`	`ATT`	2bp_insertion	frameshift_variant	55	A1,A18,A20,A24,A4,A6,A9,B1,B118,B126,B133,B19,B20,B35,B36,B39,B47,B5,B55,B56,B57,B59,B60,B61,B7,B75,B77,B78,B81,B84,B85,B86,B9,B91,B95,B99,C11,C12,C13,C14,C22,C23,C3,C48,C6,C64,C67,C68,C79,C8,C81,C83,C84,C85,C87
`Chr3:3457868`	`GAA`	`G`	2bp_deletion	frameshift_variant	55	A1,A18,A20,A24,A4,A6,A9,B1,B118,B126,B133,B19,B20,B35,B36,B39,B47,B5,B55,B56,B57,B59,B60,B61,B7,B75,B77,B78,B81,B84,B85,B86,B9,B91,B95,B99,C11,C12,C13,C14,C22,C23,C3,C48,C6,C64,C67,C68,C79,C8,C81,C83,C84,C85,C87
`Chr3:3457908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C46,C53
`Chr3:3457913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr3:3457915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr3:3457944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802812.1

1788 aa

894

1788

Asp_protease_2

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF13650 Asp_protease_2 607-699 aa PF00078 RVT_1 964-1119 aa PF17919 RT_RNaseH_2 1183-1281 aa PF17917 RT_RNaseH 1211-1310 aa PF17921 Integrase_H2C2 1411-1468 aa PF00665 rve 1489-1582 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802812.1`	Pfam	`PF13650`	Asp_protease_2	Domain	607	699	1.4e-06	29.7	Aspartyl protease
`XP_057802812.1`	Pfam	`PF00078`	RVT_1	Domain	964	1119	9.8e-30	104.6	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057802812.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1183	1281	2.8e-32	111.5	RNase H-like domain found in reverse transcriptase
`XP_057802812.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1211	1310	2.6e-36	124.7	RNase H-like domain found in reverse transcriptase
`XP_057802812.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1411	1468	3.1e-12	47.2	Integrase zinc binding domain
`XP_057802812.1`	Pfam	`PF00665`	rve	Domain	1489	1582	4.1e-16	59.8	Integrase core domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946829.1
ATGCCACGTTCTTCTCGTACAGGCGTATTAGTTTTTGATCCAGAAATCGAGAAGACCGCACGAAAGTTGAAGAAGCAAGCTAAGGAGTGGAAAAAGAGATCCAATTCTGCTCCACCGAGTCTTGAGGATCAAGAAGAAATTGAAGATCCAATGGGTGACCGTAATAATAGGGATGAGGAGAACGATAGAAAGATCGTTGATCCTCGACAGGAACCACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAGCAATCGCCC...

CDS

1 records

下载 CDS FASTA

LOC131018106
ATGCCACGTTCTTCTCGTACAGGCGTATTAGTTTTTGATCCAGAAATCGAGAAGACCGCACGAAAGTTGAAGAAGCAAGCTAAGGAGTGGAAAAAGAGATCCAATTCTGCTCCACCGAGTCTTGAGGATCAAGAAGAAATTGAAGATCCAATGGGTGACCGTAATAATAGGGATGAGGAGAACGATAGAAAGATCGTTGATCCTCGACAGGAACCACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAGCAATCGCCC...

Protein

1 records

下载 Protein FASTA

XP_057802812.1
MPRSSRTGVLVFDPEIEKTARKLKKQAKEWKKRSNSAPPSLEDQEEIEDPMGDRNNRDEENDRKIVDPRQEPPQLIRELGRHRSNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPNHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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