Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G000310`

Chromosome: Chr03 Coordinates: 3539980-3542995 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G000310`
Name	SmilChr03G000310
Description	uncharacterized SmilChr03G000310
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	3539980 - 3542995 / `-`

ID Mapping

NCBI Gene ID	`LOC131016882`
GeneID	`131016882`
locus_tag	`-`
NCBI Name	`LOC131016882`
Original query	`SmilChr03G000310`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
Description	Piz; symbol=Piz; hit=Os06g0286700; species=rice; confidence=low
Product	Piz; symbol=Piz; hit=Os06g0286700; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os06g0286700` (Piz) - identity=26.8; qcov=0.426; evalue=3.6e-07; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131016882

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057801649.1`
2	Cytoplasm	细胞质	0.60000	`XP_057801649.1`
3	Nucleus	细胞核	0.40000	`XP_057801649.1`
4	Cell membrane	细胞膜	0.20000	`XP_057801649.1`
5	Chromosome	染色体	0.00000	`XP_057801649.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:3540207`	`C`	`CTA`	2bp_insertion	frameshift_variant	8	B109,C21,C32,C36,C67,C68,C81,C83
`Chr3:3540209`	`A`	`ATC`	2bp_insertion	frameshift_variant	10	A8,B100,B128,B134,B16,B70,B77,C15,C51,C79
`Chr3:3540212`	`TAG`	`T`	2bp_deletion	frameshift_variant	37	A14,B101,B105,B118,B129,B139,B28,B34,B37,B38,B40,B45,B48,B55,B59,B65,B67,B7,C1,C13,C14,C27,C30,C33,C34,C35,C47,C56,C64,C69,C70,C75,C77,C9,D1,D2,D3
`Chr3:3540228`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B68,B98
`Chr3:3540228`	`A`	`AT`	1bp_insertion	CDS_variant	2	B68,B98
`Chr3:3540255`	`CTG`	`C`	2bp_deletion	frameshift_variant	42	A13,A14,A9,B101,B118,B139,B14,B28,B31,B34,B38,B39,B45,B48,B55,B59,B7,B71,B81,B84,B88,C1,C13,C14,C2,C20,C27,C30,C32,C34,C37,C43,C54,C57,C63,C74,C80,C82,D1,D10,D3,D8
`Chr3:3540257`	`G`	`A`	EMS_canonical_SNV	stop_gained	61	A11,A19,A2,A21,A24,A9,B1,B104,B105,B112,B114,B120,B122,B13,B134,B135,B19,B22,B23,B24,B25,B30,B31,B41,B46,B52,B54,B63,B64,B67,B71,B77,B83,B86,B9,B90,B95,B97,C10,C18,C2,C22,C25,C26,C28,C31,C36,C41,C48,C5,C53,C6,C60,C61,C69,C72,C73,C77,C84,C9,D2
`Chr3:3540260`	`C`	`CAT`	2bp_insertion	frameshift_variant	26	A14,A9,B101,B118,B139,B28,B31,B34,B38,B45,B48,B55,B59,B7,C1,C13,C14,C27,C30,C34,C43,C74,C82,D1,D3,D8
`Chr3:3540263`	`CT`	`C`	1bp_deletion	frameshift_variant	19	A13,B14,B39,B45,B71,B81,B84,B88,C2,C20,C32,C37,C54,C57,C63,C74,C80,D10,D8
`Chr3:3540271`	`T`	`TCA`	2bp_insertion	frameshift_variant	10	B125,B31,B42,B45,B69,B76,B89,C36,C68,C83
`Chr3:3540279`	`AAG`	`A`	2bp_deletion	frameshift_variant	14	A1,A9,B101,B71,C11,C2,C32,C43,C48,C55,C60,C61,C80,C84
`Chr3:3540282`	`CCT`	`C`	2bp_deletion	frameshift_variant	5	A20,A21,B87,C12,C7

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057945666.1
GCTAAATTAAGATTCTATCAAATTCTTGTCCAAAATTCTCATAATTATACTCTCTTTCCCTTCAACTGATATCGATCATGGCGGCCTACGCAGCCTTGGTTTCTCTAATGCATATCATAGACGACCTCGAGCGCCACCATTCCCCTCCGATTTCTCTCAACAAACAACAAGTTCAATCGCTCACTGAAATTATCACGTTCTTGCAGGAGTTTCTCGAAGCTAATAACTCCCCTGTTTCCGACGAACCAGATCCCTTGGAG...

CDS

1 records

Download CDS FASTA

LOC131016882
ATGGCGGCCTACGCAGCCTTGGTTTCTCTAATGCATATCATAGACGACCTCGAGCGCCACCATTCCCCTCCGATTTCTCTCAACAAACAACAAGTTCAATCGCTCACTGAAATTATCACGTTCTTGCAGGAGTTTCTCGAAGCTAATAACTCCCCTGTTTCCGACGAACCAGATCCCTTGGAGATGCGTATTGCAGATGCAGCTTATGCAGCTGAAGACGCCATCGAATCTCATATCGTGGCCAAGATTCAGCTGAGCAG...

Protein

1 records

Download Protein FASTA

XP_057801649.1
MAAYAALVSLMHIIDDLERHHSPPISLNKQQVQSLTEIITFLQEFLEANNSPVSDEPDPLEMRIADAAYAAEDAIESHIVAKIQLSRSREAYNSPVSDEADPEDPKTVSSNHDDDDDEEMNLFQDVQNVIQEMDQIKSLAMQRNTEKMVLHDKRRSFVSASSSTGKNSSGMVVWSEGVVNGILEMLVSDQRQRQVIPITGMGGIEPSSDDVVVMENLLVLEGIANFKCSEEVVKRIPNIKKLGIVYIGRGGIEQDDYYCL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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