当前解析结果
SmilChr03G000316| 统一新 Gene ID | SmilChr03G000316 |
|---|---|
| 名称 | SmilChr03G000316 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3594451 - 3597472 / - |
| NCBI Gene ID | LOC131016825 |
|---|---|
| GeneID | 131016825 |
| locus_tag | - |
| NCBI Name | LOC131016825 |
| 原始查询 | SmilChr03G000316 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=28.1; qcov=1.06; evalue=2.32e-66; confidence=low |
| Rice | Os07g0186500- identity=30.2; qcov=0.943; evalue=1.14e-82; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016825 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801565.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057801565.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057801565.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801566.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801566.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3594545 |
TTA |
T |
2bp_deletion | frameshift_variant | 17 | A10,A24,B133,B26,B29,B46,B47,B63,B74,B96,C18,C39,C59,C61,C74,C80,C87 |
Chr3:3594566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr3:3594570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B134,B92 |
Chr3:3594618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,C4,C57,C70 |
Chr3:3594619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C7 |
Chr3:3594699 |
AAT |
A |
2bp_deletion | frameshift_variant | 29 | A11,A16,A20,B104,B113,B117,B12,B120,B124,B26,B54,B74,B79,B9,C17,C24,C30,C31,C32,C37,C62,C73,C79,C82,C83,C85,C9,D10,D11 |
Chr3:3594702 |
C |
CAA |
2bp_insertion | frameshift_variant | 19 | A11,A16,A20,B113,B117,B12,B120,B124,B26,B74,B79,C17,C30,C37,C62,C79,C82,C9,D10 |
Chr3:3594704 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | C52,C64 |
Chr3:3594704 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | C52,C64 |
Chr3:3594714 |
G |
GAT |
2bp_insertion | frameshift_variant | 2 | C24,C31 |
Chr3:3594714 |
G |
GAT |
2bp_insertion | CDS_variant | 2 | C24,C31 |
Chr3:3594735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801565.1PF00931
NB-ARC 181-343 aa
PF13401
AAA_22 192-285 aa
PF23559
WHD_DRP 429-499 aa
PF23598
LRR_14 552-745 aa
XP_057801566.1PF00931
NB-ARC 49-211 aa
PF13401
AAA_22 60-153 aa
PF23559
WHD_DRP 297-367 aa
PF23598
LRR_14 420-613 aa
XP_057801567.1PF00931
NB-ARC 49-211 aa
PF13401
AAA_22 60-153 aa
PF23559
WHD_DRP 297-367 aa
PF23598
LRR_14 420-613 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801565.1 |
Pfam | PF00931 |
NB-ARC | Domain | 181 | 343 | 6.3e-38 | 130.8 | NB-ARC domain |
XP_057801565.1 |
Pfam | PF13401 |
AAA_22 | Domain | 192 | 285 | 5.3e-07 | 30.7 | AAA domain |
XP_057801565.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 499 | 1.8e-17 | 63.8 | Disease resistance protein Winged helix domain |
XP_057801565.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 552 | 745 | 5e-20 | 72.3 | Leucine-rich repeat region |
XP_057801566.1 |
Pfam | PF00931 |
NB-ARC | Domain | 49 | 211 | 5e-38 | 131.1 | NB-ARC domain |
XP_057801566.1 |
Pfam | PF13401 |
AAA_22 | Domain | 60 | 153 | 6.4e-07 | 30.5 | AAA domain |
XP_057801566.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 297 | 367 | 1.1e-17 | 64.5 | Disease resistance protein Winged helix domain |
XP_057801566.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 420 | 613 | 3.3e-20 | 72.9 | Leucine-rich repeat region |
XP_057801567.1 |
Pfam | PF00931 |
NB-ARC | Domain | 49 | 211 | 5e-38 | 131.1 | NB-ARC domain |
XP_057801567.1 |
Pfam | PF13401 |
AAA_22 | Domain | 60 | 153 | 6.4e-07 | 30.5 | AAA domain |
XP_057801567.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 297 | 367 | 1.1e-17 | 64.5 | Disease resistance protein Winged helix domain |
XP_057801567.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 420 | 613 | 3.3e-20 | 72.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。