当前解析结果
SmilChr03G000337| 统一新 Gene ID | SmilChr03G000337 |
|---|---|
| 名称 | SmilChr03G000337 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3820800 - 3827343 / + |
| NCBI Gene ID | LOC131018118 |
|---|---|
| GeneID | 131018118 |
| locus_tag | - |
| NCBI Name | LOC131018118 |
| 原始查询 | SmilChr03G000337 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=28.7; qcov=1.03; evalue=3.35e-92; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.3; qcov=0.964; evalue=7.34e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018118 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802823.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802823.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802823.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802823.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802823.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3820817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:3820954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C19,C20,C45,C64,C66 |
Chr3:3820972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:3821060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,C47 |
Chr3:3825156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:3825277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B93,C53,C60,D2 |
Chr3:3825494 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B102 |
Chr3:3825494 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B102 |
Chr3:3825495 |
TC |
* |
1bp_deletion | CDS_variant | 1 | B102 |
Chr3:3825496 |
CGG |
C |
2bp_deletion | frameshift_variant | 1 | B102 |
Chr3:3825496 |
CGG |
C |
2bp_deletion | CDS_variant | 1 | B102 |
Chr3:3825498 |
GGC |
* |
2bp_deletion | CDS_variant | 1 | B102 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802823.1PF18052
Rx_N 5-93 aa
PF00931
NB-ARC 156-325 aa
PF23559
WHD_DRP 415-485 aa
PF23598
LRR_14 539-863 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802823.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 93 | 1e-19 | 71.1 | Rx N-terminal domain |
XP_057802823.1 |
Pfam | PF00931 |
NB-ARC | Domain | 156 | 325 | 9.7e-43 | 146.4 | NB-ARC domain |
XP_057802823.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 415 | 485 | 8.3e-22 | 77.7 | Disease resistance protein Winged helix domain |
XP_057802823.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 539 | 863 | 1.4e-17 | 64.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。