Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000339`

染色体: Chr03 坐标: 3846142-3856819 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000339`
名称	SmilChr03G000339
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3846142 - 3856819 / `-`

ID 对照

NCBI Gene ID	`LOC131016841`
GeneID	`131016841`
locus_tag	`-`
NCBI Name	`LOC131016841`
原始查询	`SmilChr03G000339`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.1; qcov=1.01; evalue=1.08e-77; confidence=low
Rice	`Os10g0183000` (OsLSR) - identity=26.9; qcov=1.04; evalue=1.3e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016841

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801592.1`
2	Nucleus	细胞核	0.00000	`XP_057801592.1`
3	Chromosome	染色体	0.00000	`XP_057801592.1`
4	Centromere	着丝粒	0.00000	`XP_057801592.1`
5	Chromatin	染色质	0.00000	`XP_057801592.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3852328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:3852344`	`C`	`CG`	1bp_insertion	frameshift_variant	1	B104
`Chr3:3852344`	`C`	`CG`	1bp_insertion	CDS_variant	1	B104
`Chr3:3852348`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	B104
`Chr3:3852348`	`G`	`GAA`	2bp_insertion	CDS_variant	1	B104
`Chr3:3852368`	`ATC`	`A`	2bp_deletion	frameshift_variant	46	A15,A20,A21,A24,A3,B1,B103,B108,B128,B134,B14,B15,B26,B27,B33,B40,B42,B44,B45,B70,B71,B72,B76,B78,B89,B9,B91,B94,C18,C31,C34,C37,C43,C45,C5,C52,C57,C61,C63,C66,C8,C80,C9,D4,D5,D8
`Chr3:3852561`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr3:3852590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B136,B52,C72,C80
`Chr3:3852652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,C69
`Chr3:3852692`	`TG`	`T`	1bp_deletion	frameshift_variant	6	B117,B38,B39,B42,B43,D7
`Chr3:3852719`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	B67
`Chr3:3852719`	`A`	`AGG`	2bp_insertion	CDS_variant	1	B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801592.1

792 aa

396

792

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-478 aa PF23598 LRR_14 530-772 aa

XP_057801593.1

792 aa

396

792

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-478 aa PF23598 LRR_14 530-772 aa

XP_057801594.1

792 aa

396

792

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-478 aa PF23598 LRR_14 530-772 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801592.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	1e-40	139.9	NB-ARC domain
`XP_057801592.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	478	1.2e-22	80.5	Disease resistance protein Winged helix domain
`XP_057801592.1`	Pfam	`PF23598`	LRR_14	Repeat	530	772	1.3e-23	84.0	Leucine-rich repeat region
`XP_057801593.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	1e-40	139.9	NB-ARC domain
`XP_057801593.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	478	1.2e-22	80.5	Disease resistance protein Winged helix domain
`XP_057801593.1`	Pfam	`PF23598`	LRR_14	Repeat	530	772	1.3e-23	84.0	Leucine-rich repeat region
`XP_057801594.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	1e-40	139.9	NB-ARC domain
`XP_057801594.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	478	1.2e-22	80.5	Disease resistance protein Winged helix domain
`XP_057801594.1`	Pfam	`PF23598`	LRR_14	Repeat	530	772	1.3e-23	84.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009099236.1
TGGGCTGGCACGTTGATTCCATATTGGGCTTGTAAATTATAATTGCTGGGCTTTGGTTAACAAAATAAAACAAGGGCCCGAAAAGGTAATAAATACACACACAAAAAAATATCTTTGTTTAGTGAAAGCTTATACCGAAAACAAACTCAAAAAAATTGAAAATATTTTCAGCTGGAGCAACTGACCTGATTGTGCTTTTGATGTTGTTGGTCCTTGCTCAACACCTAAAGATCTTCTTTAAAGGAAAAACAGCCTATAAT...

XM_057945610.1
CCATATTGGGCTTGTAAATTATAATTGCTGGGCTTTGGTTAACAAAATAAAACAAGGGCCCGAAAAGGTAATAAATACACACACAAAAAAATATCTTTGTTTAGTGAAAGCTTATACCGAAAACAAACTCAAAAAAATTGAAAATATTTTCAGCTGGAGCAACTGACCTGATTGTGCTTTTGATGTTGTTGGTCCTTGCTCAACACCTAAAGATCTTCTTTAAAGGAAAAACAGCCTATAATCTGGATTGGGGCTGGTTT...

CDS

3 records

下载 CDS FASTA

LOC131016841
ATGGCTTATTCTACTCTTGTTTCACTTGAAAGAACCATTGATCAATTCCTCAATCATAATCAATTTTCCATTTCTCCTCACGAAAAAAAACATATTATATCTCTCGATAAATATGTTATTACACTCCGAGCTTTTCTTGAGGATTTTCCCGAGAAAGCCAAGAGTTTGGAAGCAAGAATGAGGAATGTAGCAATGGAGGCAGAAGATGTTATCGAATTGTATATGATGGAAAAAATCCACTACAATATTCGATATACCCA...

Protein

3 records

下载 Protein FASTA

XP_057801592.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHIISLDKYVITLRAFLEDFPEKAKSLEARMRNVAMEAEDVIELYMMEKIHYNIRYTHWIAELRRIKFIFQLRRIENQMDSIAGVVVEIKNSIITIKDAELDDSVGTSSSSSQGAEAGKIDMVGLNEDLLEIKAWLCGDSRQLQILPITGMGGIGKTTLARNAYDDPLIMEHFQIRVWVTITQDYSEERILSNIFDSLKEFNRERDDRSMAEKVYKILVGRRFLIVMDDMW...

XP_057801593.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHIISLDKYVITLRAFLEDFPEKAKSLEARMRNVAMEAEDVIELYMMEKIHYNIRYTHWIAELRRIKFIFQLRRIENQMDSIAGVVVEIKNSIITIKDAELDDSVGTSSSSSQGAEAGKIDMVGLNEDLLEIKAWLCGDSRQLQILPITGMGGIGKTTLARNAYDDPLIMEHFQIRVWVTITQDYSEERILSNIFDSLKEFNRERDDRSMAEKVYKILVGRRFLIVMDDMW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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