当前解析结果
SmilChr03G000346| 统一新 Gene ID | SmilChr03G000346 |
|---|---|
| 名称 | SmilChr03G000346 |
| 描述 | GDSL esterase/lipase LIP-4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3901596 - 3902226 / + |
| NCBI Gene ID | LOC131016967 |
|---|---|
| GeneID | 131016967 |
| locus_tag | - |
| NCBI Name | LOC131016967 |
| 原始查询 | SmilChr03G000346 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDSL esterase/lipase LIP-4-like |
| 产物 | GDSL esterase/lipase LIP-4-like |
| Arabidopsis | AT1G56670 (AT1G56670)GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842122] identity=46.5; qcov=0.796; evalue=7.7e-29; confidence=medium |
| Rice | Os05g0159200 (OsGELP61)- identity=46.7; qcov=0.753; evalue=6.34e-32; confidence=medium |
| GO | GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | - |
| Pfam | PF00657 (Lipase_GDSL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057801802.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057801802.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801802.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801802.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801802.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3901647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr3:3901743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C56 |
Chr3:3901931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr3:3901960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr3:3901984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:3902030 |
C |
CGG |
2bp_insertion | frameshift_variant | 3 | B111,B68,B78 |
Chr3:3902030 |
C |
CGG |
2bp_insertion | CDS_variant | 3 | B111,B68,B78 |
Chr3:3902031 |
T |
TTA |
2bp_insertion | frameshift_variant | 3 | B111,B68,B78 |
Chr3:3902031 |
T |
TTA |
2bp_insertion | CDS_variant | 3 | B111,B68,B78 |
Chr3:3902042 |
A |
AAT |
2bp_insertion | frameshift_variant | 3 | B111,B68,B78 |
Chr3:3902042 |
A |
AAT |
2bp_insertion | CDS_variant | 3 | B111,B68,B78 |
Chr3:3902049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801802.1PF00657
Lipase_GDSL 35-142 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801802.1 |
Pfam | PF00657 |
Lipase_GDSL | Family | 35 | 142 | 1.4e-07 | 32.6 | GDSL-like Lipase/Acylhydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。