Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000366`

染色体: Chr03 坐标: 4088674-4092835 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000366`
名称	SmilChr03G000366
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4088674 - 4092835 / `-`

ID 对照

NCBI Gene ID	`LOC131018129`
GeneID	`131018129`
locus_tag	`-`
NCBI Name	`LOC131018129`
原始查询	`SmilChr03G000366`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.4; qcov=0.656; evalue=6.05e-30; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=27.6; qcov=0.376; evalue=1.23e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018129

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057802834.1`
2	Nucleus	细胞核	0.80000	`XP_057802834.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802834.1`
4	Chromosome	染色体	0.00000	`XP_057802834.1`
5	Centromere	着丝粒	0.00000	`XP_057802834.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4088730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B130,B73,C79
`Chr3:4088732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B104,B48,D6
`Chr3:4088746`	`CA`	`C`	1bp_deletion	frameshift_variant	43	A10,A13,A15,A16,A2,A9,B100,B104,B105,B118,B125,B130,B136,B139,B140,B2,B22,B23,B26,B32,B4,B48,B59,B73,B78,B83,B87,B90,B92,B94,C13,C27,C28,C35,C49,C59,C74,C75,C79,D10,D4,D6,D9
`Chr3:4088772`	`ATC`	`A`	2bp_deletion	frameshift_variant	24	A9,B100,B104,B106,B110,B118,B125,B139,B27,B32,B35,B4,B59,B78,B83,B87,B90,B92,B97,C35,C49,C59,C75,D9
`Chr3:4088792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:4088805`	`G`	`GGT`	2bp_insertion	frameshift_variant	3	B64,B85,C37
`Chr3:4088805`	`G`	`GGT`	2bp_insertion	CDS_variant	3	B64,B85,C37
`Chr3:4088807`	`CAA`	`C`	2bp_deletion	frameshift_variant	3	B64,B85,C37
`Chr3:4088807`	`CAA`	`C`	2bp_deletion	CDS_variant	3	B64,B85,C37
`Chr3:4088887`	`G`	`GC`	1bp_insertion	frameshift_variant	4	B103,B105,B22,B23
`Chr3:4088887`	`G`	`GC`	1bp_insertion	CDS_variant	4	B103,B105,B22,B23
`Chr3:4088888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802834.1

654 aa

327

654

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 33-65 aa PF12937 F-box-like 34-65 aa PF08268 FBA_3 128-303 aa PF03478 Beta-prop_KIB1-4 128-307 aa PF07734 FBA_1 129-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802834.1`	Pfam	`PF00646`	F-box	Domain	33	65	7.2e-14	51.7	F-box domain
`XP_057802834.1`	Pfam	`PF12937`	F-box-like	Domain	34	65	7.5e-10	39.1	F-box-like
`XP_057802834.1`	Pfam	`PF08268`	FBA_3	Repeat	128	303	1e-25	91.1	F-box associated beta propeller domain
`XP_057802834.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	128	307	7e-15	55.9	KIB1-4 beta-propeller
`XP_057802834.1`	Pfam	`PF07734`	FBA_1	Repeat	129	380	1.1e-29	104.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946851.1
AACCCTTTCTTTAAGAGAGAGACTTAACCGCACTGCCGCTTCTCCATAGTGACGCCGTCGAATGCCACCACACCCATACCATCATCTTCCTTGATTTTCTAAGATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGACGAAATCAGCAAAATCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTATCAAGATTGCCGGTGAAATCACTGT...

CDS

1 records

下载 CDS FASTA

LOC131018129
ATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGACGAAATCAGCAAAATCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTATCAAGATTGCCGGTGAAATCACTGTTGAGATTAAGGTGCGTTTCAAAATCATGGGGCTCTTTAAATGGCAGCGACAGATTCATAAAAAAACACCACCAAAATTCGTTGAACAACCCTTCTTTCCCCCA...

Protein

1 records

下载 Protein FASTA

XP_057802834.1
MKNEKKVQQFLSRSARIGRRRRRIRRRRNQQNLHLPEEIIEEILSRLPVKSLLRLRCVSKSWGSLNGSDRFIKKHHQNSLNNPSFPQQRVIVESDLVEQPQYCSLLSVLSGPTSTIPLSPLADPMNTTLTEYRIVGSCNGLLCILHDQNTIFQLWNPSTRISKKLPEISNPNSGVRNFGFGWVESTNEYKVFVLVVHYYDNSKVGKVYSSKTKSWKTIELCDDLDYCWPGGVFAGGKLYWKNGHDKVIIFWDLKSEVFGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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