当前解析结果
SmilChr03G000368| 统一新 Gene ID | SmilChr03G000368 |
|---|---|
| 名称 | SmilChr03G000368 |
| 描述 | uncharacterized SmilChr03G000368 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4115408 - 4119854 / + |
| NCBI Gene ID | LOC131016980 |
|---|---|
| GeneID | 131016980 |
| locus_tag | - |
| NCBI Name | LOC131016980 |
| 原始查询 | SmilChr03G000368 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0858700; species=rice; confidence=low |
| 产物 | hit=Os01g0858700; species=rice; confidence=low |
| Arabidopsis | AT2G27590 (AT2G27590)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817305] identity=75; qcov=0.39; evalue=6.05e-18; confidence=low |
| Rice | Os01g0858700- identity=90; qcov=0.325; evalue=5.62e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016980 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057801820.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057801820.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057801820.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801820.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801820.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4115854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:4115857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr3:4115858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr3:4115888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr3:4115922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B60,B67,C20 |
Chr3:4115924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B64 |
Chr3:4115938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:4115941 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B33 |
Chr3:4115941 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B33 |
Chr3:4115945 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B33 |
Chr3:4115945 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B33 |
Chr3:4115950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B40 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。