Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G000370`

Chromosome: Chr03 Coordinates: 4143797-4145166 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G000370`
Name	SmilChr03G000370
Description	F-box/kelch-repeat protein At3g06240-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	4143797 - 4145166 / `-`

ID Mapping

NCBI Gene ID	`LOC131016900`
GeneID	`131016900`
locus_tag	`-`
NCBI Name	`LOC131016900`
Original query	`SmilChr03G000370`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	F-box/kelch-repeat protein At3g06240-like
Product	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.2; qcov=1.09; evalue=1.48e-32; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=23.4; qcov=0.922; evalue=1.15e-14; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131016900

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801684.1`
2	Cytoplasm	细胞质	1.00000	`XP_057801684.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801684.1`
4	Chromosome	染色体	0.00000	`XP_057801684.1`
5	Centromere	着丝粒	0.00000	`XP_057801684.1`

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EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057801684.1

384 aa

192

384

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 11-51 aa PF12937 F-box-like 12-54 aa PF08268 FBA_3 107-303 aa PF03478 Beta-prop_KIB1-4 122-308 aa PF07734 FBA_1 125-380 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057801684.1`	Pfam	`PF00646`	F-box	Domain	11	51	2.5e-10	40.6	F-box domain
`XP_057801684.1`	Pfam	`PF12937`	F-box-like	Domain	12	54	7.8e-08	32.7	F-box-like
`XP_057801684.1`	Pfam	`PF08268`	FBA_3	Repeat	107	303	1.7e-13	51.0	F-box associated beta propeller domain
`XP_057801684.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	122	308	5.5e-08	33.3	KIB1-4 beta-propeller
`XP_057801684.1`	Pfam	`PF07734`	FBA_1	Repeat	125	380	3.9e-22	79.4	F-box associated beta propeller domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057945701.1
ATTAGTAATTGCTAGAATGCCACAAAAAGATGCTGCTCATCTTGACCCTTTCCTATTTATTTTTTCTTCTTAGTCCTCAGAAACATATATAGCAGCATTGGGTATGGAGATCGAAAGCAGTAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCGGTGAAATCACTGTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCAGCGAAAGATTAATAAAAAAAC...

CDS

1 records

Download CDS FASTA

LOC131016900
ATGGAGATCGAAAGCAGTAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCGGTGAAATCACTGTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCAGCGAAAGATTAATAAAAAAACACCACCAAAATTCGATGAAAAACCCATCTTTCCTCCAACAAAGGTTCATTGTAGAGACGGATTCGGTTGAATGGCCTCAGCAATGTTCTCTGCTGTCGGTTTT...

Protein

1 records

Download Protein FASTA

XP_057801684.1
MEIESSSQQSLHLPEEIIGEILPRLPVKSLLRFRCVSKSWGSLIGSERLIKKHHQNSMKNPSFLQQRFIVETDSVEWPQQCSLLSVLSGPINTIPFSPLAYPTNNTLPMGYHFAYPRNTTLSIGYEIVGSCNGLLCIVDDENIFHLWNPSTRIISKKLPEISLVNYLDDFDNFGFGWVESSDEYKVFVNVVKSDSSVGEIYSTRTKSWKTIDLCPYFLPFRKGGVFAGGKLYWMYEDDKVIIFLDLKSEEFGRIEIPFDQ...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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