Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000401

染色体: Chr03 坐标: 4377832-4386068 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000401
名称SmilChr03G000401
描述putative late blight resistance protein homolog R1B-16
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向4377832 - 4386068 / -

ID 对照

NCBI Gene IDLOC131016935
GeneID131016935
locus_tag-
NCBI NameLOC131016935
原始查询SmilChr03G000401

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述putative late blight resistance protein homolog R1B-16
产物putative late blight resistance protein homolog R1B-16
ArabidopsisAT5G35450 (AT5G35450)
Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508]
identity=32.7; qcov=0.399; evalue=2.3e-09; confidence=low
Rice-
-
GOGO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016935

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801727.1
2 Cytoplasm 细胞质 0.80000 XP_057801727.1
3 Chromosome 染色体 0.00000 XP_057801727.1
4 Centromere 着丝粒 0.00000 XP_057801727.1
5 Chromatin 染色质 0.00000 XP_057801727.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:4383990 TC * 1bp_deletion CDS_variant 2 B10,C33
Chr3:4383995 AG * 1bp_deletion CDS_variant 2 B10,C33
Chr3:4384021 AGG A 2bp_deletion frameshift_variant 1 B110
Chr3:4384021 AGG A 2bp_deletion CDS_variant 1 B110
Chr3:4384039 G A EMS_canonical_SNV CDS_variant 3 B131,B28,C62
Chr3:4384051 TA T 1bp_deletion frameshift_variant 3 A6,B26,B43
Chr3:4384051 TA T 1bp_deletion CDS_variant 3 A6,B26,B43
Chr3:4384471 G A EMS_canonical_SNV CDS_variant 2 B124,B79
Chr3:4384500 C T EMS_canonical_SNV CDS_variant 3 B123,C16,C68
Chr3:4384508 G A EMS_canonical_SNV CDS_variant 2 B15,C87
Chr3:4384574 G A EMS_canonical_SNV stop_gained 12 B120,B134,B25,B58,B63,B83,C30,C50,C57,C8,C82,D8
Chr3:4384583 G A EMS_canonical_SNV stop_gained 2 B74,C14

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XR_009099266.1
ACAGTTTGTAGTTTGAGGGCTTACCTACCTGACTGGAGAGCGACATATAGAGCCCTAGACGGTTGACGGCTAGAGGGCGAGACAGCAGATGGGAACGGCAGCGATTCGTAGCCGGCCGGAGGTGCGAACGGCGTCGACGTGAGCAGGTGCGCGCTGATTGATCAATATGTAGTTTCGCCAGAATTAGATTATAAACCAAAATCACAAACTTGAAGCTTGGTTGGCGGCGAGAGGGCGAGATAGCGGATGGGAACGGCAGC...
XR_009099267.1
AGTTTGTAGTTTGAGGGCTTACCTACCTGACTGGAGAGCGACATATAGAGCCCTAGACGGTTGACGGCTAGAGGGCGAGACAGCAGATGGGAACGGCAGCGATTCGTAGCCGGCCGGAGGTGCGAACGGCGTCGACGTGAGCAGCTTGGTTGGCGGCGAGAGGGCGAGATAGCGGATGGGAACGGCAGCGATTCGTTGGCCGGCCGGAGGTGCGAACGGCGTCGACGTGAGCAGCATGATCGAGCTGGATAGTCGATTCC...

CDS

2 records

下载 CDS FASTA
LOC131016935
ATGCCGCAACTAAGGCATCTCATTATCCTCGGTTATTCTAGTTGTTACTTAACTCATCCCAATAGTGCTCCTTTTGCTCTAAACAATCTGCAAACACTAGGGAAAGTGAGAGATCTCGATTGTTCATTAAGTCTCCTCCACATGATTCCCAACCTTAGGAAGCTGTCCATCTCTTATTCGTGGGGATCGGGAGAATCACTCTTCCATAATCTTGTACATCTCCATCAACTTGAAAATTTGAAGCTGGAAAAGGAGAGCTA...
LOC131016935
ATGCCGCAACTAAGGCATCTCATTATCCTCGGTTATTCTAGTTGTTACTTAACTCATCCCAATAGTGCTCCTTTTGCTCTAAACAATCTGCAAACACTAGGGAAAGTGAGAGATCTCGATTGTTCATTAAGTCTCCTCCACATGATTCCCAACCTTAGGAAGCTGTCCATCTCTTATTCGTGGGGATCGGGAGAATCACTCTTCCATAATCTTGTACATCTCCATCAACTTGAAAATTTGAAGCTGGAAAAGGAGAGCTA...

Protein

2 records

下载 Protein FASTA
XP_057801727.1
MPQLRHLIILGYSSCYLTHPNSAPFALNNLQTLGKVRDLDCSLSLLHMIPNLRKLSISYSWGSGESLFHNLVHLHQLENLKLEKESYRCKSGVHDLLLPTSLKKLALIGWGFHDPYLKISGPLPNLQVLKLRKFNFVQQEWVTSDTDFPKLRFLLIDRSDLKQWNSEGSHFPLLEHLLIHSCRNLSEIPDSMGEIPTLKLIEVKDCENSVAESVKLIQEEQQSYGDDVFQVRCIGCKPTQKPLPPPPPAIKRPVSARWNI...
XP_057801728.1
MPQLRHLIILGYSSCYLTHPNSAPFALNNLQTLGKVRDLDCSLSLLHMIPNLRKLSISYSWGSGESLFHNLVHLHQLENLKLEKESYRCKSGVHDLLLPTSLKKLALIGWGFHDPYLKISGPLPNLQVLKLRKFNFVQQEWVTSDTDFPKLRFLLIDRSDLKQWNSEGSHFPLLEHLLIHSCRNLSEIPDSMGEIPTLKLIEVKDCENSVAESVKLIQEEQQSYGDDVFQVRCIGCKPTQKPLPPPPPAIKRPVSARWNI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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