当前解析结果
SmilChr03G000403| 统一新 Gene ID | SmilChr03G000403 |
|---|---|
| 名称 | SmilChr03G000403 |
| 描述 | inactive disease susceptibility protein LOV1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4391247 - 4391696 / - |
| NCBI Gene ID | LOC131018150 |
|---|---|
| GeneID | 131018150 |
| locus_tag | - |
| NCBI Name | LOC131018150 |
| 原始查询 | SmilChr03G000403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inactive disease susceptibility protein LOV1-like |
| 产物 | inactive disease susceptibility protein LOV1-like |
| Arabidopsis | AT3G50950 (ZAR1)HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=27.3; qcov=0.859; evalue=3.3e-10; confidence=low |
| Rice | Os08g0542200- identity=51.1; qcov=0.302; evalue=4.58e-13; confidence=low |
| GO | GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018150 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802851.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802851.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802851.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802851.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802851.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4391252 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B129,B73,C12 |
Chr3:4391252 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B129,B73,C12 |
Chr3:4391324 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C33 |
Chr3:4391324 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C33 |
Chr3:4391389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr3:4391402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr3:4391423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:4391442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr3:4391450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B43,B74 |
Chr3:4391463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B43,B74,C33 |
Chr3:4391476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:4391493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B43,B74,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802851.1PF00931
NB-ARC 96-148 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802851.1 |
Pfam | PF00931 |
NB-ARC | Domain | 96 | 148 | 3.2e-11 | 43.8 | NB-ARC domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。