当前解析结果
SmilChr03G000415| 统一新 Gene ID | SmilChr03G000415 |
|---|---|
| 名称 | SmilChr03G000415 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4477123 - 4482445 / - |
| NCBI Gene ID | LOC131016820 |
|---|---|
| GeneID | 131016820 |
| locus_tag | - |
| NCBI Name | LOC131016820 |
| 原始查询 | SmilChr03G000415 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.8; qcov=0.747; evalue=2.14e-69; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.6; qcov=0.82; evalue=2.4e-65; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016820 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057801556.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057801556.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057801556.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801556.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801556.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4477809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B85 |
Chr3:4477835 |
T |
TC |
1bp_insertion | frameshift_variant | 8 | A3,B104,B113,B13,B136,B138,C55,C74 |
Chr3:4477837 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | A3,B104,B113,B13,B136,B138,C55,C74 |
Chr3:4477921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B89 |
Chr3:4477981 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | A7,B117,B13,C20,C55 |
Chr3:4477981 |
CT |
C |
1bp_deletion | CDS_variant | 5 | A7,B117,B13,C20,C55 |
Chr3:4477987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B117,B13,C20,C55 |
Chr3:4477988 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | A7,B117,B13,C20,C55 |
Chr3:4477988 |
A |
AT |
1bp_insertion | CDS_variant | 5 | A7,B117,B13,C20,C55 |
Chr3:4478007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C20,C55 |
Chr3:4478031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B86 |
Chr3:4478134 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801556.1PF00931
NB-ARC 187-356 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 574-778 aa
XP_057801557.1PF00931
NB-ARC 187-356 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 574-778 aa
XP_057801558.1PF00931
NB-ARC 187-356 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 574-778 aa
XP_057801559.1PF00931
NB-ARC 187-356 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 574-778 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801556.1 |
Pfam | PF00931 |
NB-ARC | Domain | 187 | 356 | 1.8e-39 | 135.8 | NB-ARC domain |
XP_057801556.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 6.9e-18 | 65.2 | Disease resistance protein Winged helix domain |
XP_057801556.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 778 | 2.4e-17 | 63.4 | Leucine-rich repeat region |
XP_057801557.1 |
Pfam | PF00931 |
NB-ARC | Domain | 187 | 356 | 1.8e-39 | 135.8 | NB-ARC domain |
XP_057801557.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 6.9e-18 | 65.2 | Disease resistance protein Winged helix domain |
XP_057801557.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 778 | 2.4e-17 | 63.4 | Leucine-rich repeat region |
XP_057801558.1 |
Pfam | PF00931 |
NB-ARC | Domain | 187 | 356 | 1.8e-39 | 135.8 | NB-ARC domain |
XP_057801558.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 6.9e-18 | 65.2 | Disease resistance protein Winged helix domain |
XP_057801558.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 778 | 2.4e-17 | 63.4 | Leucine-rich repeat region |
XP_057801559.1 |
Pfam | PF00931 |
NB-ARC | Domain | 187 | 356 | 1.8e-39 | 135.8 | NB-ARC domain |
XP_057801559.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 6.9e-18 | 65.2 | Disease resistance protein Winged helix domain |
XP_057801559.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 778 | 2.4e-17 | 63.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。