Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000438`

染色体: Chr03 坐标: 4726876-4728393 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000438`
名称	SmilChr03G000438
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4726876 - 4728393 / `-`

ID 对照

NCBI Gene ID	`LOC131016893`
GeneID	`131016893`
locus_tag	`-`
NCBI Name	`LOC131016893`
原始查询	`SmilChr03G000438`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=27.5; qcov=0.941; evalue=4.14e-25; confidence=low
Rice	`Os12g0128000` (OsFbox638) - identity=23.1; qcov=0.985; evalue=7.84e-13; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131016893

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801663.1`
2	Cytoplasm	细胞质	0.60000	`XP_057801663.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801663.1`
4	Chromosome	染色体	0.00000	`XP_057801663.1`
5	Centromere	着丝粒	0.00000	`XP_057801663.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4726926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C14,C5,C63,C73,D5
`Chr3:4727011`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B50,B52
`Chr3:4727020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B90,B92,D5
`Chr3:4727254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B113,C72
`Chr3:4727275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,B87
`Chr3:4727336`	`T`	`TA`	1bp_insertion	frameshift_variant	21	A14,B10,B100,B107,B113,B128,B129,B136,B140,B29,B33,B4,B66,B80,B92,C28,C6,C62,C7,D5,D9
`Chr3:4727390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B3,B44,C47,C53
`Chr3:4727397`	`AAC`	`A`	2bp_deletion	frameshift_variant	21	A14,B10,B100,B107,B113,B118,B128,B129,B136,B140,B29,B4,B66,B80,B92,C28,C6,C62,C7,D5,D9
`Chr3:4727404`	`T`	`TAG`	2bp_insertion	frameshift_variant	21	A14,B10,B100,B107,B113,B118,B128,B129,B136,B140,B29,B4,B66,B80,B92,C28,C6,C62,C7,D5,D9
`Chr3:4727408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:4727422`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B113,B118
`Chr3:4727422`	`G`	`GT`	1bp_insertion	CDS_variant	2	B113,B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801663.1

409 aa

204

409

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 52-91 aa PF12937 F-box-like 53-85 aa PF08268 FBA_3 147-328 aa PF07734 FBA_1 153-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801663.1`	Pfam	`PF00646`	F-box	Domain	52	91	2e-13	50.3	F-box domain
`XP_057801663.1`	Pfam	`PF12937`	F-box-like	Domain	53	85	9.1e-09	35.7	F-box-like
`XP_057801663.1`	Pfam	`PF08268`	FBA_3	Repeat	147	328	9.5e-13	48.6	F-box associated beta propeller domain
`XP_057801663.1`	Pfam	`PF07734`	FBA_1	Repeat	153	405	1.5e-15	57.7	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945680.1
GGAACTTCACCGCAGTTTGTCAATTTTAGGGTTTATTTTGGTTCCATGCCTTTGAATCTCATGCGTAACCCTTTCTTTAAGAGAGAGACTTAACCGCACTGCCGCTTCTCCATAGTGACGCCGTCGAATGCCACCACACCCATACCATCATCTTCCTTGATTTTCTAAGATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAA...

CDS

1 records

下载 CDS FASTA

LOC131016893
ATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGGACAAAGAAGAAGAAACCAGCCATCTCTCCATCTTCCCGAAGAAATCATCGAAGAAATACTGTCAATATTGCCGGTGAAATCACTGTTGAGATTTAGGTGCGTTTCGAAAACATGGCGGTCTTTAATAGGCAG...

Protein

1 records

下载 Protein FASTA

XP_057801663.1
MKNEKKVQQFLSRSARIGRRRRRIRRRRRRRRRRRRRRRGRRGQRRRNQPSLHLPEEIIEEILSILPVKSLLRFRCVSKTWRSLIGSKRFIKAHHQNSMKNPCFPHQRLIIREKLNDRLEECSLQSLLSEAPISRYSLDDAMATLLPYQTSGCCNGLFCVLKNSRKRAEILQEIYLWNPSTRTSKKLPVISSPGIVCNYGFGWVESSDEYKVFVSVSYYLQEEIKWVGKVYSSRKKSWKTIEHSVDLVSCGVPGIFGGRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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