当前解析结果
SmilChr03G000450| 统一新 Gene ID | SmilChr03G000450 |
|---|---|
| 名称 | SmilChr03G000450 |
| 描述 | cytosolic sulfotransferase 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4816779 - 4817934 / + |
| NCBI Gene ID | LOC131017132 |
|---|---|
| GeneID | 131017132 |
| locus_tag | - |
| NCBI Name | LOC131017132 |
| 原始查询 | SmilChr03G000450 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic sulfotransferase 5-like |
| 产物 | cytosolic sulfotransferase 5-like |
| Arabidopsis | AT3G45070 (AT3G45070)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642] identity=50.8; qcov=0.966; evalue=1.97e-116; confidence=high |
| Rice | Os06g0626600- identity=46.9; qcov=0.982; evalue=1e-98; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation) |
| KEGG | - |
| Pfam | PF00685 (Sulfotransfer_1); PF13469 (Sulfotransfer_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057801850.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057801850.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057801850.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801850.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801850.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4816876 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | D6 |
Chr3:4816876 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | D6 |
Chr3:4816879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B107,B67,C46 |
Chr3:4816884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,D6 |
Chr3:4816889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B107,B67,C46 |
Chr3:4816906 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B7 |
Chr3:4816906 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B7 |
Chr3:4816913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr3:4816953 |
TGG |
T |
2bp_deletion | frameshift_variant | 16 | A15,B101,B107,B122,B137,B21,B26,B4,B67,B90,B92,C10,C46,C71,C75,D4 |
Chr3:4816956 |
AAG |
A |
2bp_deletion | frameshift_variant | 2 | B64,C37 |
Chr3:4816956 |
AAG |
A |
2bp_deletion | CDS_variant | 2 | B64,C37 |
Chr3:4816959 |
T |
TTC |
2bp_insertion | frameshift_variant | 2 | B64,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801850.1PF00685
Sulfotransfer_1 64-323 aa
PF13469
Sulfotransfer_3 156-248 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801850.1 |
Pfam | PF00685 |
Sulfotransfer_1 | Domain | 64 | 323 | 2.8e-76 | 257.0 | Sulfotransferase domain |
XP_057801850.1 |
Pfam | PF13469 |
Sulfotransfer_3 | Domain | 156 | 248 | 8.3e-11 | 43.3 | Sulfotransferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。