当前解析结果
SmilChr03G000451| 统一新 Gene ID | SmilChr03G000451 |
|---|---|
| 名称 | SmilChr03G000451 |
| 描述 | cytosolic sulfotransferase 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4824378 - 4825594 / + |
| NCBI Gene ID | LOC131017133 |
|---|---|
| GeneID | 131017133 |
| locus_tag | - |
| NCBI Name | LOC131017133 |
| 原始查询 | SmilChr03G000451 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic sulfotransferase 5-like |
| 产物 | cytosolic sulfotransferase 5-like |
| Arabidopsis | AT3G45070 (AT3G45070)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642] identity=49.7; qcov=0.966; evalue=1.17e-114; confidence=high |
| Rice | Os02g0684100- identity=47.4; qcov=0.982; evalue=5.14e-97; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation) |
| KEGG | - |
| Pfam | PF00685 (Sulfotransfer_1); PF13469 (Sulfotransfer_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017133 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057801851.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057801851.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801851.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801851.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801851.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4824461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr3:4824483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B126,B68,C23 |
Chr3:4824495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:4824524 |
G |
GA |
1bp_insertion | frameshift_variant | 5 | A6,B14,B30,B37,C80 |
Chr3:4824524 |
G |
GA |
1bp_insertion | CDS_variant | 5 | A6,B14,B30,B37,C80 |
Chr3:4824598 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | A20,A22,B104,C27,D3 |
Chr3:4824598 |
GA |
G |
1bp_deletion | CDS_variant | 5 | A20,A22,B104,C27,D3 |
Chr3:4824604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B90 |
Chr3:4824683 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B1 |
Chr3:4824683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:4824722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B60,C52,C74 |
Chr3:4824750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801851.1PF00685
Sulfotransfer_1 65-324 aa
PF13469
Sulfotransfer_3 155-249 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801851.1 |
Pfam | PF00685 |
Sulfotransfer_1 | Domain | 65 | 324 | 6.6e-74 | 249.3 | Sulfotransferase domain |
XP_057801851.1 |
Pfam | PF13469 |
Sulfotransfer_3 | Domain | 155 | 249 | 2.6e-09 | 38.4 | Sulfotransferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。