Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000457`

染色体: Chr03 坐标: 4865793-4869546 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000457`
名称	SmilChr03G000457
描述	disease resistance RPP8-like protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4865793 - 4869546 / `-`

ID 对照

NCBI Gene ID	`LOC131017137`
GeneID	`131017137`
locus_tag	`-`
NCBI Name	`LOC131017137`
原始查询	`SmilChr03G000457`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance RPP8-like protein 3
产物	disease resistance RPP8-like protein 3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28; qcov=0.977; evalue=2.22e-59; confidence=low
Rice	`Os01g0547000` - identity=25.7; qcov=0.885; evalue=1.42e-53; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017137

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801854.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801854.1`
3	Nucleus	细胞核	0.00000	`XP_057801854.1`
4	Chromosome	染色体	0.00000	`XP_057801854.1`
5	Centromere	着丝粒	0.00000	`XP_057801854.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4866008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:4866030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,D11
`Chr3:4866064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B108,B126,B68,C36
`Chr3:4866091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,B35,D11
`Chr3:4866105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,A5,B72,B8,C11
`Chr3:4866177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B113,D5
`Chr3:4866180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr3:4866232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B131,B34,B81,B89
`Chr3:4866252`	`GCT`	`G`	2bp_deletion	frameshift_variant	2	B122,C79
`Chr3:4866252`	`GCT`	`G`	2bp_deletion	CDS_variant	2	B122,C79
`Chr3:4866283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C77,C79
`Chr3:4866321`	`AT`	`A`	1bp_deletion	frameshift_variant	9	B37,B4,B46,B68,B72,C25,C71,C74,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801854.1

823 aa

412

823

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 133-291 aa PF23598 LRR_14 502-772 aa PF13855 LRR_8 530-583 aa

XP_057801855.1

823 aa

412

823

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 133-291 aa PF23598 LRR_14 502-772 aa PF13855 LRR_8 530-583 aa

XP_057801856.1

823 aa

412

823

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 133-291 aa PF23598 LRR_14 502-772 aa PF13855 LRR_8 530-583 aa

XP_057801857.1

823 aa

412

823

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 133-291 aa PF23598 LRR_14 502-772 aa PF13855 LRR_8 530-583 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801854.1`	Pfam	`PF00931`	NB-ARC	Domain	133	291	6.8e-28	98.1	NB-ARC domain
`XP_057801854.1`	Pfam	`PF23598`	LRR_14	Repeat	502	772	2.8e-27	96.1	Leucine-rich repeat region
`XP_057801854.1`	Pfam	`PF13855`	LRR_8	Repeat	530	583	1.5e-08	35.0	Leucine rich repeat
`XP_057801855.1`	Pfam	`PF00931`	NB-ARC	Domain	133	291	6.8e-28	98.1	NB-ARC domain
`XP_057801855.1`	Pfam	`PF23598`	LRR_14	Repeat	502	772	2.8e-27	96.1	Leucine-rich repeat region
`XP_057801855.1`	Pfam	`PF13855`	LRR_8	Repeat	530	583	1.5e-08	35.0	Leucine rich repeat
`XP_057801856.1`	Pfam	`PF00931`	NB-ARC	Domain	133	291	6.8e-28	98.1	NB-ARC domain
`XP_057801856.1`	Pfam	`PF23598`	LRR_14	Repeat	502	772	2.8e-27	96.1	Leucine-rich repeat region
`XP_057801856.1`	Pfam	`PF13855`	LRR_8	Repeat	530	583	1.5e-08	35.0	Leucine rich repeat
`XP_057801857.1`	Pfam	`PF00931`	NB-ARC	Domain	133	291	6.8e-28	98.1	NB-ARC domain
`XP_057801857.1`	Pfam	`PF23598`	LRR_14	Repeat	502	772	2.8e-27	96.1	Leucine-rich repeat region
`XP_057801857.1`	Pfam	`PF13855`	LRR_8	Repeat	530	583	1.5e-08	35.0	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945872.1
ATTACCACTAATTAATTGTTTATTGCAAATCAGACTTTGATTATCGAACCCTTTCCTTGTTGAGATGCCTTAAGTCTTTTCGAGGTTCATCTTCATATCATTTCTGGCCACTTTTTGTATGTTCAAAATCTCTTCCAATTACAACTCCGGATTGAATCGGAAGATCTATACAACAAAATAAAAGCGAAACTGCGAAAGCAAGGATTCATCGGAAGATCAAGATGTGCTAATTTCATGAGAAGTAGGATTGAATAGAAAGT...

XM_057945871.1
CCACTAATTAATTGTTTATTGCAAATCAGACTTTGATTATCGAACCCTTTCCTTGTTGAGATGCCTTAAGTCTTTTCGAGGTTCATCTTCATATCATTTCTGGCCACTTTTTGTATGTTCAAAATCTCTTCCAATTACAACTCCGGATTGAATCGGAAGATCTATACAACAAAATAAAAGCGAAACTGCGAAAGCAAGTTTTAGGATAGTGTAAAATTCTTTTCAAATCAAAGGATTCATCGGAAGATCAAGATGTGCTA...

CDS

4 records

下载 CDS FASTA

LOC131017137
ATGTCGGAGGCCCTCCTCTTATCGGTGATACAAAAGCTTGACGTATATGATGGAGAGGGCAAAGTGGAAAAGGAAATGATAATCAAAGAGATTAGAGAGATGGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGCAGAAGCTTAAATTTTTTGGTATCTGACCTTGTCGACGTGGTTGATGATGCCTACGAGCTTCTACCTTTTACCTCTTATACGAAGCCCATCCATAGTTGGATTGGAGAGATCAAAAAGAAGAT...

Protein

4 records

下载 Protein FASTA

XP_057801854.1
MSEALLLSVIQKLDVYDGEGKVEKEMIIKEIREMVDIVRDKKLEEGRSLNFLVSDLVDVVDDAYELLPFTSYTKPIHSWIGEIKKKMLKLGDDDESNMRSSQNVEDDVDVVGLKEDVEMLLRAMIVGEEGFYKTLLIKGMTGIGKTTLAREIYNHPTVVERFKRRAWVSNSADFTIKGLLIKLIQQVEDPQNLHASSSLENMDIARLRDVLRQHLRGKRYLIVLDDVSKQMHLTSFMKALPLELNGSRLLLTSHTTLIEI...

XP_057801855.1
MSEALLLSVIQKLDVYDGEGKVEKEMIIKEIREMVDIVRDKKLEEGRSLNFLVSDLVDVVDDAYELLPFTSYTKPIHSWIGEIKKKMLKLGDDDESNMRSSQNVEDDVDVVGLKEDVEMLLRAMIVGEEGFYKTLLIKGMTGIGKTTLAREIYNHPTVVERFKRRAWVSNSADFTIKGLLIKLIQQVEDPQNLHASSSLENMDIARLRDVLRQHLRGKRYLIVLDDVSKQMHLTSFMKALPLELNGSRLLLTSHTTLIEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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