当前解析结果
SmilChr03G000462| 统一新 Gene ID | SmilChr03G000462 |
|---|---|
| 名称 | SmilChr03G000462 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4944991 - 4950450 / + |
| NCBI Gene ID | LOC131017142 |
|---|---|
| GeneID | 131017142 |
| locus_tag | - |
| NCBI Name | LOC131017142 |
| 原始查询 | SmilChr03G000462 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32; qcov=1.03; evalue=9.92e-129; confidence=low |
| Rice | Os07g0186500- identity=26.7; qcov=1.04; evalue=3.99e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017142 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801862.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801862.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801862.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801862.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801862.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4945304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:4945329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B13,B132,B60,C16,C19 |
Chr3:4945357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B93,C45,C53,D10 |
Chr3:4945361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B13,B132,B47,C16 |
Chr3:4945396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:4945410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B74,C14 |
Chr3:4945411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:4945414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B93,C45,C53,D10 |
Chr3:4945428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B74,C14 |
Chr3:4945450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B8,B80,C42,C60 |
Chr3:4945473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B8,B80,C42,C60 |
Chr3:4945477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B104,B118,B74,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801862.1PF18052
Rx_N 5-88 aa
PF00931
NB-ARC 166-329 aa
PF13401
AAA_22 179-269 aa
PF23559
WHD_DRP 417-494 aa
PF23598
LRR_14 550-863 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801862.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 88 | 2.5e-18 | 66.7 | Rx N-terminal domain |
XP_057801862.1 |
Pfam | PF00931 |
NB-ARC | Domain | 166 | 329 | 1.2e-35 | 123.4 | NB-ARC domain |
XP_057801862.1 |
Pfam | PF13401 |
AAA_22 | Domain | 179 | 269 | 7.4e-07 | 30.3 | AAA domain |
XP_057801862.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 417 | 494 | 2.1e-12 | 47.6 | Disease resistance protein Winged helix domain |
XP_057801862.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 550 | 863 | 2.4e-26 | 93.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。