Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000466`

染色体: Chr03 坐标: 4977151-5000163 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000466`
名称	SmilChr03G000466
描述	putative disease resistance protein At1g58400
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4977151 - 5000163 / `-`

ID 对照

NCBI Gene ID	`LOC131017145`
GeneID	`131017145`
locus_tag	`-`
NCBI Name	`LOC131017145`
原始查询	`SmilChr03G000466`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g58400
产物	putative disease resistance protein At1g58400
Arabidopsis	`AT1G58400` (AT1G58400) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842209] identity=31; qcov=0.892; evalue=1.5e-50; confidence=low
Rice	`Os07g0186500` - identity=27; qcov=0.876; evalue=1.04e-49; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017145

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057801864.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801864.1`
3	Cytoplasm	细胞质	0.20000	`XP_057801864.1`
4	Nucleus	细胞核	0.00000	`XP_057801864.1`
5	Chromosome	染色体	0.00000	`XP_057801864.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4977355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B22,B23,C39
`Chr3:4977356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B65,C19,C20,C6
`Chr3:4977375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B31,B34,B55,C62
`Chr3:4977400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C53,D10
`Chr3:4977447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,B6,B89
`Chr3:4977499`	`A`	`AT`	1bp_insertion	frameshift_variant	129	A1,A10,A11,A13,A18,A2,A21,A23,A3,A5,A7,B101,B102,B106,B108,B109,B110,B112,B113,B114,B117,B118,B121,B122,B123,B124,B125,B126,B128,B130,B131,B133,B135,B138,B140,B15,B18,B19,B2,B20,B24,B30,B34,B35,B36,B37,B38,B40,B44,B45,B46,B5,B51,B53,B54,B57,B59,B61,B68,B69,B7,B71,B72,B73,B76,B77,B78,B8,B82,B83,B84,B85,B86,B88,B89,B9,B93,B94,B95,B97,B99,C10,C11,C12,C14,C16,C17,C18,C19,C2,C20,C21,C23,C26,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C4,C44,C48,C5,C51,C54,C58,C6,C61,C63,C64,C65,C66,C67,C69,C70,C71,C75,C80,C83,C87,C9,D5,D6,D9
`Chr3:4977542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B27,B4,C82
`Chr3:4977561`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,D4
`Chr3:4977582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,B69
`Chr3:4977627`	`GC`	`G`	1bp_deletion	frameshift_variant	21	A13,B106,B121,B29,B30,B34,B51,B61,B72,B78,B8,B86,B93,C11,C23,C29,C33,C36,C51,C65,C69
`Chr3:4977685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A23,B100,B24,B31
`Chr3:4977688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801864.1

836 aa

418

836

NB-ARC

LRR_14

PF00931 NB-ARC 145-311 aa PF23598 LRR_14 523-770 aa

XP_057801865.1

835 aa

418

835

NB-ARC

LRR_14

PF00931 NB-ARC 145-310 aa PF23598 LRR_14 522-769 aa

XP_057801867.1

834 aa

417

834

NB-ARC

LRR_14

PF00931 NB-ARC 145-309 aa PF23598 LRR_14 521-768 aa

XP_057801868.1

833 aa

416

833

NB-ARC

LRR_14

PF00931 NB-ARC 145-308 aa PF23598 LRR_14 520-767 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801864.1`	Pfam	`PF00931`	NB-ARC	Domain	145	311	7.5e-24	84.9	NB-ARC domain
`XP_057801864.1`	Pfam	`PF23598`	LRR_14	Repeat	523	770	1.6e-30	106.7	Leucine-rich repeat region
`XP_057801865.1`	Pfam	`PF00931`	NB-ARC	Domain	145	310	2.7e-24	86.4	NB-ARC domain
`XP_057801865.1`	Pfam	`PF23598`	LRR_14	Repeat	522	769	1.7e-30	106.7	Leucine-rich repeat region
`XP_057801867.1`	Pfam	`PF00931`	NB-ARC	Domain	145	309	1.6e-24	87.2	NB-ARC domain
`XP_057801867.1`	Pfam	`PF23598`	LRR_14	Repeat	521	768	1.7e-30	106.7	Leucine-rich repeat region
`XP_057801868.1`	Pfam	`PF00931`	NB-ARC	Domain	145	308	8e-26	91.4	NB-ARC domain
`XP_057801868.1`	Pfam	`PF23598`	LRR_14	Repeat	520	767	1.7e-30	106.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945885.1
ATTTAATTAGTTGCAATGTTGTTTAGAATAATTATTAATTAGGTTCCTATCTAGAGAAGAAAACAGATCTAGAATTCTGTCAAACACAGAGGGCTATAGAAAGGAAAATCCCTTTCAATTACGACATAGCTCATTGTGGGAGGATTGAATCGGAAGATCCATACAAGAAGATTGAGACGAGCCAAGATAACAGGCAAAACGTATTGCAGAAAAAAAAAAAAAAAAAAAAGAAGAAAGAAAAACAGATCACACTCAGCTGG...

XM_057945884.1
ATTTAATTAGTTGCAATGTTGTTTAGAATAATTATTAATTAGGTTCCTATCTAGAGAAGAAAACAGATCTAGAATTCTGTCAAACACAGAGGGCTATAGAAAGGAAAATCCCTTTCAATTACGACATAGCTCATTGTGGGAGGATTGAATCGGAAGATCCATACAAGAAGATTGAGACGAGCCAAGATAACAGGCAAAACGTATTGCAGAAAAAAAAAAAAAAAAAAAAGAAGAAAGAAAAACAGATCACACTCAGCTGG...

CDS

4 records

下载 CDS FASTA

LOC131017145
ATGGCAGAGGCCCGTATCTTATCGATGATGCGAAAGCTGGAATGTCGGCTAGCAAGGTCTAACTGTTTGAACATTTGCATGAGGCTAACGTGCTTCCCTGATGACAGCATTGGTGTAAGGAAATGGATAGACGAGGAGCAAACAGAAATGATAAATGAGCTGAGAATGATTGTGGATATAATGAGAGACAATAAATTGGAAGAGGGGAGACGCCTCGATTATCTCGTATGCGACGTTGCCGAGATGGTTCAAGTTGCCCT...

Protein

4 records

下载 Protein FASTA

XP_057801864.1
MAEARILSMMRKLECRLARSNCLNICMRLTCFPDDSIGVRKWIDEEQTEMINELRMIVDIMRDNKLEEGRRLDYLVCDVAEMVQVALVCEYHFQVRQTLTWIREIKKHLLKLGVETDSGNVGEDEDEDVVGLVDAVEKLLRTRILNEEISRSTLLLKGMSGIGKTLLARQLYNHSDVVARFDRRAWVCVTHLTIKEILMKLIQQVVKSEELERRDSLLEKMERADNRSLQEMLHRYLQGMRYLIVLDDLPKRMYLRSILE...

XP_057801865.1
MAEARILSMMRKLECRLARSNCLNICMRLTCFPDDSIGVRKWIDEEQTEMINELRMIVDIMRDNKLEEGRRLDYLVCDVAEMVQVALVCEYHFQVRQTLTWIREIKKHLLKLGVETDSGNVGEDEDEDVVGLVDAVEKLLRTRILNEEISRSTLLLKGMSGIGKTLLARQLYNHSDVVARFDRRAWVCVTHLTIKEILMKLIQQVVKSEELERRDSLLEKMERADNRSLQEMLHRYLQGMRYLIVLDDLPKRMYLRSILE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器