Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000486`

染色体: Chr03 坐标: 5180191-5187760 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000486`
名称	SmilChr03G000486
描述	putative disease resistance RPP13-like protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	5180191 - 5187760 / `-`

ID 对照

NCBI Gene ID	`LOC131017162`
GeneID	`131017162`
locus_tag	`-`
NCBI Name	`LOC131017162`
原始查询	`SmilChr03G000486`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance RPP13-like protein 3
产物	putative disease resistance RPP13-like protein 3
Arabidopsis	`AT3G46730` (AT3G46730) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823826] identity=29.5; qcov=0.656; evalue=6.32e-47; confidence=low
Rice	`Os08g0539700` (Pib-H8) - identity=25.5; qcov=0.763; evalue=2e-36; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017162

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057801875.1`
2	Cell membrane	细胞膜	0.60000	`XP_057801875.1`
3	Cytoplasm	细胞质	0.40000	`XP_057801875.1`
4	Nucleus	细胞核	0.00000	`XP_057801875.1`
5	Chromosome	染色体	0.00000	`XP_057801875.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:5181191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:5181205`	`GGT`	`G`	2bp_deletion	frameshift_variant	8	A20,B39,B64,B91,C24,C44,C61,C87
`Chr3:5181209`	`T`	`TGA`	2bp_insertion	frameshift_variant	8	A20,B39,B64,B91,C24,C44,C61,C87
`Chr3:5181222`	`ATC`	`A`	2bp_deletion	frameshift_variant	4	A21,B111,C5,C7
`Chr3:5181222`	`ATC`	`A`	2bp_deletion	CDS_variant	4	A21,B111,C5,C7
`Chr3:5181253`	`CTT`	`C`	2bp_deletion	frameshift_variant	6	A20,B39,B91,C24,C44,C87
`Chr3:5181259`	`C`	`CAT`	2bp_insertion	frameshift_variant	6	A20,B39,B91,C24,C44,C87
`Chr3:5181326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B121,B130,B92
`Chr3:5181327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B136,B21,B26,B4
`Chr3:5181359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B122,C25
`Chr3:5181361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr3:5181375`	`C`	`CA`	1bp_insertion	frameshift_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801875.1

999 aa

500

999

NB-ARC

LRR_14

PF00931 NB-ARC 1-158 aa PF00931 NB-ARC 333-502 aa PF23598 LRR_14 711-985 aa

XP_057801876.1

999 aa

500

999

NB-ARC

LRR_14

PF00931 NB-ARC 1-158 aa PF00931 NB-ARC 333-502 aa PF23598 LRR_14 711-985 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801875.1`	Pfam	`PF00931`	NB-ARC	Domain	1	158	4e-51	173.8	NB-ARC domain
`XP_057801875.1`	Pfam	`PF00931`	NB-ARC	Domain	333	502	4e-51	173.8	NB-ARC domain
`XP_057801875.1`	Pfam	`PF23598`	LRR_14	Repeat	711	985	5.7e-22	78.7	Leucine-rich repeat region
`XP_057801876.1`	Pfam	`PF00931`	NB-ARC	Domain	1	158	4e-51	173.8	NB-ARC domain
`XP_057801876.1`	Pfam	`PF00931`	NB-ARC	Domain	333	502	4e-51	173.8	NB-ARC domain
`XP_057801876.1`	Pfam	`PF23598`	LRR_14	Repeat	711	985	5.7e-22	78.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945893.1
CCAAGTTATATATATAAAAACCTAAAAATATATATGCATATATTGTGGGGAGCAGTTGGCAGTGCTGCTTTGATTGGAAATAACAACCAATAATCAATTTTCCTAATTATTAATTAGTATAGTATTCAATTTTAGCTTACGCTATAACAACTAAATATCTATCCTTGCAAACAATTAGTGCAAATCTAATTGTTTTCATGATACATCTGGAGCTAGATTAACACTTTTTCCTGAACTTGGAACAAGACTTTTGTGGGCTT...

XM_057945892.1
CCAAGTTATATATATAAAAACCTAAAAATATATATGCATATATTGTGGGGAGCAGTTGGCAGTGCTGCTTTGATTGGAAATAACAACCAATAATCAATTTTCCTAATTATTAATTAGTATAGTATTCAATTTTAGCTTACGCTATAACAACTAAATATCTATCCTTGCAAACAATTAGTGCAAATCTAATTGTTTTCATGATACATCTGGAGCTAGATTAACACTTTTTCCTGAACTTGGAACAAGACTTTTGTGGGCTT...

CDS

2 records

下载 CDS FASTA

LOC131017162
ATGGCTGGTATTGGAAAGACAATTCTTGCTAGACAAGTATACAACCACGAACATGTCGTTGCTCAATTCCAGTGCCGTGCTTGGGTGTGTGTTACTGACTTGACTGGGAAAGAGGTACTTATGAAACTAATACAACAGGTATTAAACAGTTATAAACTCGAAAGAGATTCCTTGATAGAGAAAATGGAGCGTGGAGACAATAAAAGTCTCCAAGAGATGCTTCACCAACACCTGAAAGGAAAGCGATATTTCATAGTTCT...

Protein

2 records

下载 Protein FASTA

XP_057801875.1
MAGIGKTILARQVYNHEHVVAQFQCRAWVCVTDLTGKEVLMKLIQQVLNSYKLERDSLIEKMERGDNKSLQEMLHQHLKGKRYFIVLDDVPKEMNWESIWKGLPNEKKGSKLLLTSRIKNTRRDPFSLHEMKNSIDYTYFMQPLNPEESWQFFSKTIFCGIDKSHEFPKHLVKIGRDMLKLCGGVRLAIKEMGMQLAEKKRLGSEWEHLLQPTPCHALLEAIMLMTIQRLDSGSDYWVNLEEVINVLKMMVDFVRDKKSE...

XP_057801876.1
MAGIGKTILARQVYNHEHVVAQFQCRAWVCVTDLTGKEVLMKLIQQVLNSYKLERDSLIEKMERGDNKSLQEMLHQHLKGKRYFIVLDDVPKEMNWESIWKGLPNEKKGSKLLLTSRIKNTRRDPFSLHEMKNSIDYTYFMQPLNPEESWQFFSKTIFCGIDKSHEFPKHLVKIGRDMLKLCGGVRLAIKEMGMQLAEKKRLGSEWEHLLQPTPCHALLEAIMLMTIQRLDSGSDYWVNLEEVINVLKMMVDFVRDKKSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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