当前解析结果
SmilChr03G000503| 统一新 Gene ID | SmilChr03G000503 |
|---|---|
| 名称 | SmilChr03G000503 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5422144 - 5426627 / + |
| NCBI Gene ID | LOC131017173 |
|---|---|
| GeneID | 131017173 |
| locus_tag | - |
| NCBI Name | LOC131017173 |
| 原始查询 | SmilChr03G000503 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.2; qcov=0.922; evalue=4.75e-57; confidence=low |
| Rice | Os01g0547000- identity=26.3; qcov=0.895; evalue=6.47e-51; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017173 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801888.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801888.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057801888.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801888.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801888.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5423934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B96,C36,C44 |
Chr3:5423954 |
CCT |
C |
2bp_deletion | frameshift_variant | 8 | A7,B14,B2,B96,C36,C44,C7,D5 |
Chr3:5423958 |
C |
CA |
1bp_insertion | frameshift_variant | 8 | A7,B14,B2,B96,C36,C44,C7,D5 |
Chr3:5423959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B47,B95,C21 |
Chr3:5423963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B2,C36,C44 |
Chr3:5423970 |
TAC |
T |
2bp_deletion | frameshift_variant | 7 | B14,B2,B96,C36,C44,C7,D5 |
Chr3:5423973 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | A7 |
Chr3:5423973 |
T |
TC |
1bp_insertion | CDS_variant | 1 | A7 |
Chr3:5423980 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | A7 |
Chr3:5423980 |
A |
AC |
1bp_insertion | CDS_variant | 1 | A7 |
Chr3:5423985 |
A |
AAC |
2bp_insertion | frameshift_variant | 4 | B14,B96,C7,D5 |
Chr3:5423985 |
A |
AAC |
2bp_insertion | CDS_variant | 4 | B14,B96,C7,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801888.1PF00931
NB-ARC 142-300 aa
PF23598
LRR_14 516-783 aa
PF13855
LRR_8 540-593 aa
XP_057801889.1PF00931
NB-ARC 142-300 aa
PF23598
LRR_14 516-783 aa
PF13855
LRR_8 540-593 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801888.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 300 | 1.7e-22 | 80.5 | NB-ARC domain |
XP_057801888.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 516 | 783 | 7.9e-32 | 111.1 | Leucine-rich repeat region |
XP_057801888.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 540 | 593 | 2.2e-07 | 31.3 | Leucine rich repeat |
XP_057801889.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 300 | 1.7e-22 | 80.5 | NB-ARC domain |
XP_057801889.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 516 | 783 | 7.9e-32 | 111.1 | Leucine-rich repeat region |
XP_057801889.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 540 | 593 | 2.2e-07 | 31.3 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。