Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000507`

染色体: Chr03 坐标: 5470584-5477430 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000507`
名称	SmilChr03G000507
描述	putative disease resistance RPP13-like protein 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	5470584 - 5477430 / `+`

ID 对照

NCBI Gene ID	`LOC131017176`
GeneID	`131017176`
locus_tag	`-`
NCBI Name	`LOC131017176`
原始查询	`SmilChr03G000507`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance RPP13-like protein 2
产物	putative disease resistance RPP13-like protein 2
Arabidopsis	`AT3G46710` (AT3G46710) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823824] identity=31; qcov=0.602; evalue=4.68e-19; confidence=low
Rice	`Os04g0111900` (PIC22) - identity=29.7; qcov=0.806; evalue=5.29e-16; confidence=low
GO	GO:0043531 (ADP binding); GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22)
InterPro	-
eggNOG	-
NR	GeneID:131017176

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801892.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801891.1`
3	Nucleus	细胞核	0.00000	`XP_057801892.1`
4	Chromosome	染色体	0.00000	`XP_057801892.1`
5	Centromere	着丝粒	0.00000	`XP_057801892.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:5474543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:5474565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:5474573`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B45
`Chr3:5474573`	`CG`	`C`	1bp_deletion	CDS_variant	1	B45
`Chr3:5474578`	`A`	`AAG`	2bp_insertion	stop_gained,frameshift_variant	1	B45
`Chr3:5474578`	`A`	`AAG`	2bp_insertion	CDS_variant	1	B45
`Chr3:5474579`	`T`	`TAC`	2bp_insertion	frameshift_variant	1	B45
`Chr3:5474579`	`T`	`TAC`	2bp_insertion	CDS_variant	1	B45
`Chr3:5474583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:5474592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr3:5474593`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C55
`Chr3:5474593`	`C`	`CG`	1bp_insertion	CDS_variant	1	C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801892.1

284 aa

142

284

NB-ARC

AAA_22

PF00931 NB-ARC 140-278 aa PF13401 AAA_22 154-260 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801892.1`	Pfam	`PF00931`	NB-ARC	Domain	140	278	8e-28	97.9	NB-ARC domain
`XP_057801892.1`	Pfam	`PF13401`	AAA_22	Domain	154	260	3.4e-06	28.1	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945908.1
ATGCACGCTGCGGCAAATAAGGAATTTATAATAATTGAAAGATTTCAACTGTATGTCTAAGCCACCAAGTCCTTTTATCTTTTCTTTTGTAACAGAAGTTTTGGAATCCTATATCAAAAAAAGCAAGCAAAAGCTCAGGAAAAGCGAGGATTGATTCGGAAAGTAGATCAAGACGAGTAAGAAGAAGATTCACAAAAAGGGCAGTTTGGTTGAAGCACAAACATGTCGGAGGCCCTCCTCTTGTCGGTGATACAGGAGCT...

XM_057945909.1
ATGCACGCTGCGGCAAATAAGGAATTTATAATAATTGAAAGATTTCAACTGTATGTCTAAGCCACCAAGTCCTTTTATCTTTTCTTTTGTAACAGAAGTTTTGGAATCCTATATCAAAAAAAGCAAGCAAAAGCTCAGGAAAAGCGAGGATTGATTCGGAAAGTAGATCAAGACGAGTAAGAAGAAGATTCACAAAAAGGGCAGTTTGGTTGAAGCACAAACATGTCGGAGGCCCTCCTCTTGTCGGTGATACAGGAGCT...

CDS

2 records

下载 CDS FASTA

LOC131017176
ATGTCGGAGGCCCTCCTCTTGTCGGTGATACAGGAGCTGGACGATTATCTAGAGAACAATCCCCCCAGAGGAAAAGAACATTTATATCAGATATGGGCTAATCGGGAAATGGAAAGAGTAATTAAAGAGATGAGAGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGGAGAATCCTCAATTTTTTTTTATCTGACCTCATTTACATGGCTAACTATATTCTCTTCCTTTCCAAATATAACCGTTATATTTA...

LOC131017176
ATGGACATAGATGTACGTGATGAAGATGTTCATGAGATGAAACCTTTGGATTCTAATAAGAGCTGGCAGTTGTTTTTGAAAACAATAAACCATGGCAATAAATTGACGGGTGACCACAAATTCCCAATGAACTTGGAGCATATGGGAAAACAGATGTTGAGAAAATGTGGCGGTCTGCCATTAGCTATAAAAGAGGTGGGAAAGCAGTTAGCAGAAAAGAAAGTCTCAGGAGGGAGTGAATGGGAACAACTTCTTGAATC...

Protein

2 records

下载 Protein FASTA

XP_057801891.1
MDIDVRDEDVHEMKPLDSNKSWQLFLKTINHGNKLTGDHKFPMNLEHMGKQMLRKCGGLPLAIKEVGKQLAEKKVSGGSEWEQLLESVDFGSTLKLLEPFYQKLDPQLESCFLYMSLFKESTTLRAGRLREIWHAAGVVSRSNYEPYINGLIDESFIEVGDKGTEYHMNPLLHMLSILKAEEKLGFEILRKNGNNRPSESPRHHRVIICSRDKFNYSTDQDKHLVSLFFHGGGYIDTSSSYWKSFELLKILDLEDFGLKI...

XP_057801892.1
MSEALLLSVIQELDDYLENNPPRGKEHLYQIWANREMERVIKEMREIVDIVRDKKLEEGRILNFFLSDLIYMANYILFLSKYNRYIYYKSILSWIGEIKKQMLKLGDDESNMRSSENVDDDVDVVGFKEEVEMLIHTRIIGKALESKKSMFKTVVIKGMSGSGKTTLAREIYNHPTVKKHFERRAWVSNSTHITLKELFIKLIQQVKDYPKNRYTSTSLENMSTQRLQGMVCQLLQGKRYLIVLDDVPKQMHLKSFLNAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器