当前解析结果
SmilChr03G000536| 统一新 Gene ID | SmilChr03G000536 |
|---|---|
| 名称 | SmilChr03G000536 |
| 描述 | disease resistance protein RPH8A-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5780085 - 5827863 / + |
| NCBI Gene ID | LOC131018199 |
|---|---|
| GeneID | 131018199 |
| locus_tag | - |
| NCBI Name | LOC131018199 |
| 原始查询 | SmilChr03G000536 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPH8A-like |
| 产物 | disease resistance protein RPH8A-like |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=30.9; qcov=1.03; evalue=2.72e-103; confidence=low |
| Rice | Os01g0547000- identity=28.1; qcov=1.04; evalue=3.49e-90; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018199 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802907.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802907.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802907.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802907.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5780417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C34 |
Chr3:5780719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B15,B55,C31,C34 |
Chr3:5780758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,B117 |
Chr3:5780771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B55,C31,C34 |
Chr3:5780785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B55,C31,C34 |
Chr3:5826157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B28,B89,C10 |
Chr3:5826275 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B117 |
Chr3:5826275 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B117 |
Chr3:5826292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B5,C55,D2,D5 |
Chr3:5826316 |
AGG |
A |
2bp_deletion | frameshift_variant | 5 | B109,B34,C46,C77,C8 |
Chr3:5826316 |
AGG |
A |
2bp_deletion | CDS_variant | 5 | B109,B34,C46,C77,C8 |
Chr3:5826320 |
T |
TAC |
2bp_insertion | frameshift_variant | 5 | B109,B34,C46,C77,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802907.1PF18052
Rx_N 6-94 aa
PF00931
NB-ARC 167-345 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 617-849 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802907.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 94 | 2.6e-22 | 79.4 | Rx N-terminal domain |
XP_057802907.1 |
Pfam | PF00931 |
NB-ARC | Domain | 167 | 345 | 1.2e-35 | 123.4 | NB-ARC domain |
XP_057802907.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 1.9e-19 | 70.2 | Disease resistance protein Winged helix domain |
XP_057802907.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 617 | 849 | 1.4e-21 | 77.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。