Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000550`

染色体: Chr03 坐标: 5959272-5962864 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000550`
名称	SmilChr03G000550
描述	probable disease resistance protein RF9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	5959272 - 5962864 / `+`

ID 对照

NCBI Gene ID	`LOC131017199`
GeneID	`131017199`
locus_tag	`-`
NCBI Name	`LOC131017199`
原始查询	`SmilChr03G000550`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein RF9
产物	probable disease resistance protein RF9
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=30; qcov=1.07; evalue=4.72e-89; confidence=low
Rice	`Os01g0547000` - identity=26.4; qcov=1.08; evalue=4.46e-74; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017199

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801917.1`
2	Nucleus	细胞核	0.00000	`XP_057801917.1`
3	Chromosome	染色体	0.00000	`XP_057801917.1`
4	Centromere	着丝粒	0.00000	`XP_057801917.1`
5	Chromatin	染色质	0.00000	`XP_057801917.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:5959403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B66
`Chr3:5959489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,C25,C7
`Chr3:5959615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr3:5959656`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B20
`Chr3:5959656`	`TG`	`T`	1bp_deletion	CDS_variant	1	B20
`Chr3:5959659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,B138,B77,C38
`Chr3:5959662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A23,D11
`Chr3:5959706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:5959732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B19,B44
`Chr3:5959741`	`AG`	`A`	1bp_deletion	frameshift_variant	8	B127,B134,B137,B16,C15,C50,D2,D9
`Chr3:5959757`	`TA`	`T`	1bp_deletion	frameshift_variant	6	B128,B138,B59,B77,C38,C70
`Chr3:5959769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801917.1

875 aa

438

875

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-90 aa PF00931 NB-ARC 167-350 aa PF23559 WHD_DRP 439-509 aa PF23598 LRR_14 694-856 aa

XP_057801918.1

844 aa

422

844

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-90 aa PF00931 NB-ARC 167-350 aa PF23559 WHD_DRP 439-509 aa PF23598 LRR_14 540-825 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801917.1`	Pfam	`PF18052`	Rx_N	Domain	6	90	2.8e-23	82.6	Rx N-terminal domain
`XP_057801917.1`	Pfam	`PF00931`	NB-ARC	Domain	167	350	1e-37	130.1	NB-ARC domain
`XP_057801917.1`	Pfam	`PF23559`	WHD_DRP	Domain	439	509	3.6e-17	62.9	Disease resistance protein Winged helix domain
`XP_057801917.1`	Pfam	`PF23598`	LRR_14	Repeat	694	856	1.3e-19	70.9	Leucine-rich repeat region
`XP_057801918.1`	Pfam	`PF18052`	Rx_N	Domain	6	90	2.6e-23	82.6	Rx N-terminal domain
`XP_057801918.1`	Pfam	`PF00931`	NB-ARC	Domain	167	350	9.3e-38	130.2	NB-ARC domain
`XP_057801918.1`	Pfam	`PF23559`	WHD_DRP	Domain	439	509	3.4e-17	62.9	Disease resistance protein Winged helix domain
`XP_057801918.1`	Pfam	`PF23598`	LRR_14	Repeat	540	825	2.9e-13	50.1	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945934.1
GCAGCTTCTCTCTTGGATAAGTATATACTAGCCAGTCATTCATGACCAGTTCAACCACCAATTAAATATCTTTTCAATTAAAATAAAAAAATTAAAAAATTGTAGAGGTCGATCGACATGGCAGCGGAGGCGGCGATCTCATCTCTGGTCGAACTACTGGGCGATCAGCTCATCCAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGAAAGGTGGAGTCGCTGAAAGCCGAGTTCAAGAGGATGCAATCCTTTCTCAAAGA...

XM_057945935.1
TCATGACCAGTTCAACCACCAATTAAATATCTTTTCAATTAAAATAAAAAAATTAAAAAATTGTAGAGGTCGATCGACATGGCAGCGGAGGCGGCGATCTCATCTCTGGTCGAACTACTGGGCGATCAGCTCATCCAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGAAAGGTGGAGTCGCTGAAAGCCGAGTTCAAGAGGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTCAAGACGAGAGCGTGCGCAA...

CDS

2 records

下载 CDS FASTA

LOC131017199
ATGGCAGCGGAGGCGGCGATCTCATCTCTGGTCGAACTACTGGGCGATCAGCTCATCCAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGAAAGGTGGAGTCGCTGAAAGCCGAGTTCAAGAGGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTCAAGACGAGAGCGTGCGCAATTGGATCTCGGAGATTAGAGAGTTGTCTCAAGATGCCCAAGATACCATCGAGATGTTCCTTCTCAACGTTGAGAGTGC...

Protein

2 records

下载 Protein FASTA

XP_057801917.1
MAAEAAISSLVELLGDQLIQKVKFLRGVEGKVESLKAEFKRMQSFLKDANKKQFQDESVRNWISEIRELSQDAQDTIEMFLLNVESAKNWGLFKRCTTFPKRMYHLYGIGDEIESILKKLDEIKKSRDMYGIKDLGEAAESSSRSEVELRRRLCPWQKDEHLVGVEDDVKKLLQESILYEKRGLSIVVLEGMGGIGKSTLAREIYNHPDVVAGPFDHRCWVVVSSEFTPQETIKQLIFELQKSKEDKQKLLDEIKKLEES...

XP_057801918.1
MAAEAAISSLVELLGDQLIQKVKFLRGVEGKVESLKAEFKRMQSFLKDANKKQFQDESVRNWISEIRELSQDAQDTIEMFLLNVESAKNWGLFKRCTTFPKRMYHLYGIGDEIESILKKLDEIKKSRDMYGIKDLGEAAESSSRSEVELRRRLCPWQKDEHLVGVEDDVKKLLQESILYEKRGLSIVVLEGMGGIGKSTLAREIYNHPDVVAGPFDHRCWVVVSSEFTPQETIKQLIFELQKSKEDKQKLLDEIKKLEES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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