当前解析结果
SmilChr03G000552| 统一新 Gene ID | SmilChr03G000552 |
|---|---|
| 名称 | SmilChr03G000552 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5974823 - 5979533 / + |
| NCBI Gene ID | LOC131017203 |
|---|---|
| GeneID | 131017203 |
| locus_tag | - |
| NCBI Name | LOC131017203 |
| 原始查询 | SmilChr03G000552 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=29.9; qcov=0.968; evalue=2.52e-86; confidence=low |
| Rice | Os01g0547000- identity=26.3; qcov=0.976; evalue=1.15e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017203 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801921.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801921.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801921.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801921.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801921.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5974955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B135,B65 |
Chr3:5975000 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B55,B59,C31,C83 |
Chr3:5975000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B55,B59,C31,C83 |
Chr3:5975023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B16,B74,B89,C79 |
Chr3:5975039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr3:5975056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B60,C52,C74 |
Chr3:5975059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B41,B90,C10,C74 |
Chr3:5975062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B91,C25,C63,C64,D3 |
Chr3:5975115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B74,B91,C8 |
Chr3:5975120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:5975133 |
C |
CT |
1bp_insertion | frameshift_variant | 138 | A10,A13,A15,A18,A24,A25,A4,A5,A9,B101,B102,B105,B106,B11,B111,B112,B113,B115,B117,B118,B119,B12,B122,B123,B124,B125,B126,B129,B13,B130,B131,B132,B133,B134,B136,B138,B14,B140,B15,B16,B18,B19,B21,B22,B23,B26,B27,B28,B29,B3,B31,B38,B39,B4,B42,B43,B44,B45,B47,B48,B49,B51,B52,B56,B6,B60,B61,B62,B64,B69,B72,B74,B75,B76,B77,B8,B80,B81,B84,B85,B86,B89,B9,B90,B92,B93,B94,B95,B98,C10,C11,C12,C15,C16,C19,C21,C24,C25,C26,C27,C28,C29,C3,C31,C33,C34,C37,C39,C4,C42,C43,C48,C50,C52,C53,C56,C57,C60,C61,C63,C65,C67,C69,C71,C73,C74,C79,C80,C82,C84,C86,D1,D10,D4,D5,D7,D8,D9 |
Chr3:5975134 |
G |
GAA |
2bp_insertion | frameshift_variant | 4 | B137,B91,C54,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801921.1PF18052
Rx_N 6-94 aa
PF00931
NB-ARC 169-354 aa
PF23559
WHD_DRP 443-512 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801921.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 94 | 1e-21 | 77.5 | Rx N-terminal domain |
XP_057801921.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 354 | 2.6e-32 | 112.5 | NB-ARC domain |
XP_057801921.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 443 | 512 | 9.8e-20 | 71.1 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。