Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000556`

染色体: Chr03 坐标: 6014982-6020144 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000556`
名称	SmilChr03G000556
描述	bifunctional TH2 protein, mitochondrial-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6014982 - 6020144 / `+`

ID 对照

NCBI Gene ID	`LOC131017217`
GeneID	`131017217`
locus_tag	`-`
NCBI Name	`LOC131017217`
原始查询	`SmilChr03G000556`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional TH2 protein, mitochondrial-like
产物	bifunctional TH2 protein%2C mitochondrial-like
Arabidopsis	`AT5G32470` (AT5G32470) heme oxygenase-like, multi-helical [Source:NCBI gene (formerly Entrezgene);Acc:833206] identity=68.5; qcov=0.979; evalue=0; confidence=high
Rice	`Os08g0566000` - identity=59; qcov=1; evalue=0; confidence=high
GO	GO:0005829 (cytosol)
KEGG	smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF03070 (TENA_THI-4)
InterPro	-
eggNOG	-
NR	GeneID:131017217

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801937.1`
2	Cytosol	细胞质基质	1.00000	`XP_057801938.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057801937.1`
4	Cytoplasm	细胞质	0.20000	`XP_057801938.1`
5	Nucleus	细胞核	0.00000	`XP_057801937.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6015273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:6015300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:6015330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B126,B26,C19
`Chr3:6015421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B40
`Chr3:6017015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B125,B45,B97,C76
`Chr3:6019588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,C15,C3,C9,D4
`Chr3:6019669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801937.1

623 aa

312

623

TENA_THI-4

PF03070 TENA_THI-4 94-191 aa PF03070 TENA_THI-4 213-299 aa

XP_057801938.1

567 aa

284

567

TENA_THI-4

PF03070 TENA_THI-4 38-135 aa PF03070 TENA_THI-4 157-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801937.1`	Pfam	`PF03070`	TENA_THI-4	Family	94	191	1.6e-20	74.5	TENA/THI-4/PQQC family
`XP_057801937.1`	Pfam	`PF03070`	TENA_THI-4	Family	213	299	1.6e-20	74.5	TENA/THI-4/PQQC family
`XP_057801938.1`	Pfam	`PF03070`	TENA_THI-4	Family	38	135	1.1e-20	75.1	TENA/THI-4/PQQC family
`XP_057801938.1`	Pfam	`PF03070`	TENA_THI-4	Family	157	243	1.1e-20	75.1	TENA/THI-4/PQQC family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945954.1
TTTCATCCGCCCATTTTAAGATAGCCAGTAAAGTTGAAATTTGGAGTAACTTTAGCAACTCTCCTCCACCTTTCTCTCTCCTCCGCTCTCCGCCACCACCACCTCCTCCTCCTGCTGCCGTCACCGGCAGACGCAGAAAGCCAGGTAAAACTCCTTCTAGAGGATTAAACTCTAGAAGAACAAGGAAATCATTTGAAAACTTGATGCAGAAACTGATAAGTTCCATCAAAACCCTATCATCGCTACAATCGCTCAATTTT...

XM_057945955.1
ATCCGCCCATTTTAAGATAGCCAGTAAAGTTGAAATTTGGAGTAACTTTAGCAACTCTCCTCCACCTTTCTCTCTCCTCCGCTCTCCGCCACCACCACCTCCTCCTCCTGCTGCCGTCACCGGCAGACGCAGAAAGCCAGGACAATTCCGATGGCATCGTCGGGAACGGGGAAGTTGCCGGCGGCGGAGGAGATAGAAGACAGTTTAGGAAAGAAGTTCTGGAACAAGTTCAAAAAGGAGCGGACTGAAGCTCTGTACAC...

CDS

2 records

下载 CDS FASTA

LOC131017217
ATGCAGAAACTGATAAGTTCCATCAAAACCCTATCATCGCTACAATCGCTCAATTTTCCCTCAAATCTCTCGTCCACATCTTGTCGCTCTTTTCCTTTCCCGGCGCTCGTTCCACGCCTCCGATCTCGCAAATTCTCATCGACTCCTGGTGATTTTAGGACAATTCCGATGGCATCGTCGGGAACGGGGAAGTTGCCGGCGGCGGAGGAGATAGAAGACAGTTTAGGAAAGAAGTTCTGGAACAAGTTCAAAAAGGAGCG...

LOC131017217
ATGGCATCGTCGGGAACGGGGAAGTTGCCGGCGGCGGAGGAGATAGAAGACAGTTTAGGAAAGAAGTTCTGGAACAAGTTCAAAAAGGAGCGGACTGAAGCTCTGTACACTCCATTTATGATCAGTTTGGCTGCTGGAAATCTCAAGCTCGACACCTTCCGCGATTATATCGCGCAGGACGCGTATTTCCTGCGTGCCTTTGTGAAAGCGTATGAAATGGCTGAGGAATGTGCTGATGATGACGATGCAAAAGTTGGGAT...

Protein

2 records

下载 Protein FASTA

XP_057801937.1
MQKLISSIKTLSSLQSLNFPSNLSSTSCRSFPFPALVPRLRSRKFSSTPGDFRTIPMASSGTGKLPAAEEIEDSLGKKFWNKFKKERTEALYTPFMISLAAGNLKLDTFRDYIAQDAYFLRAFVKAYEMAEECADDDDAKVGINVLRKSVIKELKMHDSSGDIWGFDLPKDITPNAATVKYTDFLLATASGKVDGIKAPGKLATPFEKTKLAAYTIGAMTPCMRLYAFLGKELQALVTPDEGVHPYQKWIDNYSSDAFQT...

XP_057801938.1
MASSGTGKLPAAEEIEDSLGKKFWNKFKKERTEALYTPFMISLAAGNLKLDTFRDYIAQDAYFLRAFVKAYEMAEECADDDDAKVGINVLRKSVIKELKMHDSSGDIWGFDLPKDITPNAATVKYTDFLLATASGKVDGIKAPGKLATPFEKTKLAAYTIGAMTPCMRLYAFLGKELQALVTPDEGVHPYQKWIDNYSSDAFQTAAVQTEDLLEMLSVSLTGEELDIIGKLYLQAMKLEIEFFLAQPLAQKIVVPLSKEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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