Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000580`

染色体: Chr03 坐标: 6435219-6437864 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000580`
名称	SmilChr03G000580
描述	pentatricopeptide repeat-containing protein At1g62720-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6435219 - 6437864 / `+`

ID 对照

NCBI Gene ID	`LOC131017236`
GeneID	`131017236`
locus_tag	`-`
NCBI Name	`LOC131017236`
原始查询	`SmilChr03G000580`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g62720-like
产物	pentatricopeptide repeat-containing protein At1g62720-like
Arabidopsis	`AT1G62670` (RPF2) rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564] identity=33.3; qcov=1.06; evalue=2.27e-115; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=31.6; qcov=0.863; evalue=1.57e-81; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131017236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057801947.1`
2	Chloroplast	叶绿体	0.20000	`XP_057801947.1`
3	Nucleus	细胞核	0.00000	`XP_057801947.1`
4	Chromosome	染色体	0.00000	`XP_057801947.1`
5	Centromere	着丝粒	0.00000	`XP_057801947.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6435330`	`AG`	`A`	1bp_deletion	frameshift_variant	5	A16,B18,B70,C58,C78
`Chr3:6435330`	`AG`	`A`	1bp_deletion	CDS_variant	5	A16,B18,B70,C58,C78
`Chr3:6435334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B18,B70,C58,C78
`Chr3:6435341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B18,B70,C58,C78
`Chr3:6435379`	`C`	`T`	EMS_canonical_SNV	stop_gained	106	A13,A16,A18,A20,A23,A25,A4,A5,A6,A7,B1,B10,B105,B106,B109,B112,B113,B114,B115,B12,B121,B126,B13,B130,B131,B132,B134,B136,B138,B15,B18,B22,B25,B28,B29,B32,B37,B38,B39,B40,B42,B43,B51,B52,B54,B61,B64,B68,B69,B7,B70,B71,B72,B73,B74,B75,B77,B82,B84,B86,B88,B89,B91,B94,B95,B98,C11,C15,C16,C21,C22,C24,C25,C28,C29,C31,C32,C34,C35,C39,C41,C42,C43,C46,C51,C52,C58,C63,C64,C65,C66,C68,C69,C72,C76,C77,C78,C8,C80,C81,D1,D11,D2,D4,D5,D7
`Chr3:6435426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B89,C16,C28,C81
`Chr3:6435431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B115,B71,B98
`Chr3:6435450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:6435462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:6435574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B73,B95,C24,C68
`Chr3:6435585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr3:6435599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801947.1

561 aa

280

561

PPR_2

PPR

TPR_24

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF23276 TPR_24 184-259 aa PF01535 PPR 188-212 aa PF13812 PPR_3 206-264 aa PF12854 PPR_1 214-244 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF17177 PPR_long 232-339 aa PF12854 PPR_1 246-278 aa PF01535 PPR 253-283 aa PF13041 PPR_2 255-298 aa PF13812 PPR_3 275-333 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 285-334 aa PF01535 PPR 288-318 aa PF12854 PPR_1 316-345 aa PF13041 PPR_2 320-368 aa PF01535 PPR 323-353 aa PF12854 PPR_1 351-384 aa PF13041 PPR_2 356-404 aa PF01535 PPR 359-384 aa PF13812 PPR_3 378-437 aa PF12854 PPR_1 388-416 aa PF01535 PPR 394-423 aa PF13041 PPR_2 399-439 aa PF12854 PPR_1 421-452 aa PF13041 PPR_2 425-462 aa PF01535 PPR 428-456 aa PF23276 TPR_24 439-540 aa PF13812 PPR_3 449-505 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 460-507 aa PF01535 PPR 464-493 aa PF12854 PPR_1 492-524 aa PF13041 PPR_2 495-538 aa PF01535 PPR 498-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	74	122	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	78	107	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF23276`	TPR_24	Repeat	184	259	1.6e-33	116.1	Pentatricopeptide repeat-containing protein
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	188	212	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF13812`	PPR_3	Repeat	206	264	1e-56	189.6	Pentatricopeptide repeat domain
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	214	244	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	215	264	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	219	248	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF17177`	PPR_long	Repeat	232	339	4.3e-27	95.6	Pentacotripeptide-repeat region of PRORP
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	246	278	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	253	283	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	255	298	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF13812`	PPR_3	Repeat	275	333	1e-56	189.6	Pentatricopeptide repeat domain
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	282	314	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	285	334	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	288	318	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	316	345	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	320	368	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	323	353	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	351	384	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	356	404	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	359	384	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF13812`	PPR_3	Repeat	378	437	1e-56	189.6	Pentatricopeptide repeat domain
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	388	416	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	394	423	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	399	439	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	421	452	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	425	462	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	428	456	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF23276`	TPR_24	Repeat	439	540	1.6e-33	116.1	Pentatricopeptide repeat-containing protein
`XP_057801947.1`	Pfam	`PF13812`	PPR_3	Repeat	449	505	1e-56	189.6	Pentatricopeptide repeat domain
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	456	489	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	460	507	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	464	493	9.8e-84	270.7	PPR repeat
`XP_057801947.1`	Pfam	`PF12854`	PPR_1	Repeat	492	524	7.1e-109	355.9	PPR repeat
`XP_057801947.1`	Pfam	`PF13041`	PPR_2	Repeat	495	538	1.3e-131	429.3	PPR repeat family
`XP_057801947.1`	Pfam	`PF01535`	PPR	Repeat	498	528	9.8e-84	270.7	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945964.1
TTTCGTCACATGTTTACCTTCTTTGTTCAGATCTAATCTCGCATTCGCCGCCCAACACTCTCCCTCTCTTCACATTAAATCTCACCGCCGATTAAAGATGTTGAGCAGAAGAGCAGCCGTTTCTGCAGTTGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCGCTCTCCTCTGTTCTCTCTCTACTCTTCCAAGGCTTTTCAACCTACGCTGCCCAGAATCGATTTCAATTGTGTTA...

CDS

1 records

下载 CDS FASTA

LOC131017236
ATGTTGAGCAGAAGAGCAGCCGTTTCTGCAGTTGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCGCTCTCCTCTGTTCTCTCTCTACTCTTCCAAGGCTTTTCAACCTACGCTGCCCAGAATCGATTTCAATTGTGTTAAAGAACTAAACGATGCTGTTGAATTGTTTCAAAAAATGAAGAGCATACGGTGGGTGCCTTCTGTTCGCATGTACAACAATCTAATGAGTGTTACTGC...

Protein

1 records

下载 Protein FASTA

XP_057801947.1
MLSRRAAVSAVDLIHGRGFLNRWSHKSGIRSPLFSLYSSKAFQPTLPRIDFNCVKELNDAVELFQKMKSIRWVPSVRMYNNLMSVTAKIEQYSFALVVFDEMLRMGVPVNAYTMNIAVNCCCLLKDINTGFSIMGFFFKIGYEPDVATIATLINGFFLVDKEAEAVRLFEKVLDLKLCEPNAVIILRVIDGLCKAGQVSAAHDWLHRLESSGWSPSIMAYNALIDGFCKSGMVDDALKVLYKMVGKGISPNVFTYSSIIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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