Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000582`

染色体: Chr03 坐标: 6493778-6499935 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000582`
名称	SmilChr03G000582
描述	extra-large guanine nucleotide-binding protein 3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6493778 - 6499935 / `+`

ID 对照

NCBI Gene ID	`LOC131017239`
GeneID	`131017239`
locus_tag	`-`
NCBI Name	`LOC131017239`
原始查询	`SmilChr03G000582`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	extra-large guanine nucleotide-binding protein 3-like
产物	extra-large guanine nucleotide-binding protein 3-like
Arabidopsis	`AT1G31930` (XLG3) extra-large GTP-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:840083] identity=68.4; qcov=1.03; evalue=0; confidence=high
Rice	`Os11g0206700` - identity=65.3; qcov=1; evalue=0; confidence=high
GO	GO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding)
KEGG	-
Pfam	PF00503 (G-alpha)
InterPro	-
eggNOG	-
NR	GeneID:131017239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801953.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801953.1`
3	Cytoplasm	细胞质	0.20000	`XP_057801953.1`
4	Nucleus	细胞核	0.00000	`XP_057801953.1`
5	Chromosome	染色体	0.00000	`XP_057801953.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6495326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:6495586`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B65
`Chr3:6495586`	`AG`	`A`	1bp_deletion	CDS_variant	1	B65
`Chr3:6495605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:6495640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr3:6495968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B41,C10,C58,C74,C85
`Chr3:6496370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B89,C41
`Chr3:6496605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:6496867`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A10
`Chr3:6496867`	`TC`	`T`	1bp_deletion	CDS_variant	1	A10
`Chr3:6496883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:6496889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B41,C10,C58,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801953.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801954.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801955.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801956.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801957.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801958.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801959.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801960.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801961.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

XP_057801962.1

860 aa

430

860

G-alpha

PF00503 G-alpha 442-826 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801953.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801954.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801955.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801956.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801957.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801958.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801959.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801960.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801961.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit
`XP_057801962.1`	Pfam	`PF00503`	G-alpha	Domain	442	826	1.3e-73	248.8	G-protein alpha subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057945970.1
AGCAAGTGTACACCACGCTCTCCATCCATTAACATTTTCCACTCTGTCATCGTCATCAGAGTCTAAACTACTGGTGCACTCAAGTGGGACCCATCTCTCTCCTTCTTTATCTCTAACTATGCTCAGCACATCTCGCATATGCTTATGGAAGGTTTCTTAGGAGCAGAAATGTCAATGGATTTGAAATTGGAACTGCAAACTGCTCATTTTTGTGAACTTTCCTGCAGTTTTTTATGTGATTCAAAGTTGTGTTAAGCCCC...

XM_057945975.1
AGCAAGTGTACACCACGCTCTCCATCCATTAACATTTTCCACTCTGTCATCGTCATCAGAGTCTAAACTACTGGTGCACTCAAGTGGGACCCATCTCTCTCCTTCTTTATCTCTAACTATGCTCAGCACATCTCGCATATGCTTATGGAAGGTTTCTTAGGAGCAGAAATGTCAATGGATTTGAAATTGGAACTGCAAACTGCTCATTTTTGTGAACTTTCCTGCAGTTTTTTATGTGATTCAAAGTTGTGTTAAGCCCC...

CDS

10 records

下载 CDS FASTA

LOC131017239
ATGGATAAAAATGGGGGTGAGGATTGGAGGGAGATGGTGAGGAAAATGCTTCCTCCGGGGGCTCCCTTTCCCGAAGAGGATAGCATGGATTATTCGATAGCATTAGAGTATAAGGGCCCTCCAATTTCATATGAGCTTCCAAGAGTAGAACCCGTTGACACGACTGCAGATGCAGTTCCAGTAGCTGAACCTGATTCAGAATCTACAAGTGAAACAGCCCATGTGCTAGAACCAATCCGTTTGCCTGTGTCCCGTATTGC...

Protein

10 records

下载 Protein FASTA

XP_057801953.1
MDKNGGEDWREMVRKMLPPGAPFPEEDSMDYSIALEYKGPPISYELPRVEPVDTTADAVPVAEPDSESTSETAHVLEPIRLPVSRIATVTCPPSQSPRMSGSSESVVSVLQNADSSSRSPSPSPSASLGSVYSQKSSVPREPANEGRRATVVTFNTFDRSEGRVPDTEKQVYPEFVGVTKEKKKKRKQTRFCYRCGKGKWETKESCLVCNAKYCSNCVLRSMGSMPEGRKCVACIGEPIDEPNRAKLGKHSRVLSHLLSP...

XP_057801954.1
MDKNGGEDWREMVRKMLPPGAPFPEEDSMDYSIALEYKGPPISYELPRVEPVDTTADAVPVAEPDSESTSETAHVLEPIRLPVSRIATVTCPPSQSPRMSGSSESVVSVLQNADSSSRSPSPSPSASLGSVYSQKSSVPREPANEGRRATVVTFNTFDRSEGRVPDTEKQVYPEFVGVTKEKKKKRKQTRFCYRCGKGKWETKESCLVCNAKYCSNCVLRSMGSMPEGRKCVACIGEPIDEPNRAKLGKHSRVLSHLLSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器