当前解析结果
SmilChr03G000651| 统一新 Gene ID | SmilChr03G000651 |
|---|---|
| 名称 | SmilChr03G000651 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7240797 - 7244004 / + |
| NCBI Gene ID | LOC131018236 |
|---|---|
| GeneID | 131018236 |
| locus_tag | - |
| NCBI Name | LOC131018236 |
| 原始查询 | SmilChr03G000651 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT4G12560 (CPR1)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=28.3; qcov=0.828; evalue=8.38e-23; confidence=low |
| Rice | Os07g0269800 (OsFbox361)- identity=26.8; qcov=0.783; evalue=2.01e-19; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018236 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057802943.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802943.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802943.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802943.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802943.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7240929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B119,B136,B61,B85 |
Chr3:7240967 |
A |
AT |
1bp_insertion | frameshift_variant | 15 | B103,B111,B138,B15,B42,B59,B91,C10,C32,C35,C43,C75,C77,D10,D6 |
Chr3:7240981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C76 |
Chr3:7240993 |
AC |
A |
1bp_deletion | frameshift_variant | 15 | B103,B111,B138,B15,B42,B59,B91,C10,C32,C35,C43,C75,C77,D10,D6 |
Chr3:7241286 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr3:7241286 |
TG |
T |
1bp_deletion | CDS_variant | 1 | A18 |
Chr3:7241305 |
G |
GAA |
2bp_insertion | frameshift_variant | 2 | A16,C78 |
Chr3:7241305 |
G |
GAA |
2bp_insertion | CDS_variant | 2 | A16,C78 |
Chr3:7241306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C78 |
Chr3:7241333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B113,B44,C81 |
Chr3:7241384 |
ATT |
A |
2bp_deletion | frameshift_variant | 67 | A10,A14,A20,A5,B101,B108,B109,B112,B114,B128,B131,B138,B17,B2,B3,B36,B40,B41,B42,B43,B44,B49,B55,B57,B59,B6,B69,B70,B71,B75,B79,B82,B91,B94,B96,B98,B99,C14,C17,C23,C27,C3,C30,C35,C38,C43,C46,C48,C5,C6,C60,C62,C70,C71,C74,C75,C77,C78,C81,C86,D1,D10,D11,D3,D4,D8,D9 |
Chr3:7241388 |
AT |
A |
1bp_deletion | frameshift_variant | 67 | A10,A14,A20,A5,B101,B108,B109,B112,B114,B128,B131,B138,B17,B2,B3,B36,B40,B41,B42,B43,B44,B49,B55,B57,B59,B6,B69,B70,B71,B75,B79,B82,B91,B94,B96,B98,B99,C14,C17,C23,C27,C3,C30,C35,C38,C43,C46,C48,C5,C6,C60,C62,C70,C71,C74,C75,C77,C78,C81,C86,D1,D10,D11,D3,D4,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802943.1PF12937
F-box-like 12-48 aa
PF00646
F-box 13-50 aa
PF07734
FBA_1 61-262 aa
PF08268
FBA_3 65-268 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802943.1 |
Pfam | PF12937 |
F-box-like | Domain | 12 | 48 | 9.6e-08 | 32.4 | F-box-like |
XP_057802943.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 50 | 1.6e-09 | 37.9 | F-box domain |
XP_057802943.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 61 | 262 | 3.1e-20 | 73.1 | F-box associated beta propeller domain |
XP_057802943.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 65 | 268 | 5.4e-19 | 69.1 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。