当前解析结果
SmilChr03G000664| 统一新 Gene ID | SmilChr03G000664 |
|---|---|
| 名称 | SmilChr03G000664 |
| 描述 | premnaspirodiene oxygenase-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7440550 - 7442221 / + |
| NCBI Gene ID | LOC131018238 |
|---|---|
| GeneID | 131018238 |
| locus_tag | - |
| NCBI Name | LOC131018238 |
| 原始查询 | SmilChr03G000664 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | premnaspirodiene oxygenase-like |
| 产物 | premnaspirodiene oxygenase-like |
| Arabidopsis | AT3G26320 (CYP71B36)cytochrome P450, family 71, subfamily B, polypeptide 36 [Source:NCBI gene (formerly Entrezgene);Acc:822236] identity=41.2; qcov=0.977; evalue=1.27e-116; confidence=medium |
| Rice | Os06g0500700- identity=42.5; qcov=0.975; evalue=1.95e-130; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018238 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057802945.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057802945.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802945.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802945.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802945.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7440703 |
CT |
C |
1bp_deletion | frameshift_variant | 36 | A18,A21,B101,B106,B108,B12,B124,B128,B130,B135,B138,B14,B140,B18,B19,B21,B26,B4,B47,B59,B60,B90,C29,C35,C4,C44,C48,C54,C57,C6,C64,C78,C82,D6,D7,D8 |
Chr3:7440724 |
CAT |
C |
2bp_deletion | frameshift_variant | 192 | A1,A10,A13,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A5,A6,A7,A8,A9,B10,B100,B102,B105,B11,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B124,B125,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B4,B42,B43,B45,B47,B48,B49,B5,B51,B52,B53,B55,B59,B6,B60,B61,B64,B65,B66,B67,B69,B70,B71,B72,B73,B74,B75,B76,B78,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B92,B93,B94,B97,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C24,C26,C27,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D6,D7,D9 |
Chr3:7440727 |
T |
TGC |
2bp_insertion | frameshift_variant | 187 | A1,A10,A13,A16,A18,A19,A2,A20,A22,A23,A24,A5,A6,A7,A8,A9,B10,B100,B102,B105,B11,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B124,B125,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B4,B42,B43,B45,B47,B48,B49,B5,B51,B52,B53,B55,B59,B6,B60,B61,B64,B65,B67,B70,B71,B72,B73,B74,B75,B76,B78,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B92,B94,B97,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C24,C26,C27,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D6,D7,D9 |
Chr3:7440745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:7440802 |
C |
CT |
1bp_insertion | frameshift_variant | 75 | A18,A2,A21,A24,A7,B10,B101,B104,B106,B108,B117,B122,B123,B126,B128,B129,B13,B130,B131,B135,B138,B14,B140,B18,B19,B2,B21,B23,B25,B26,B28,B32,B33,B4,B42,B43,B47,B5,B56,B59,B60,B78,B79,B85,B88,B92,B96,B97,C15,C20,C22,C28,C29,C31,C35,C36,C4,C43,C44,C48,C51,C54,C55,C57,C59,C6,C64,C66,C8,C82,C85,D11,D4,D6,D7 |
Chr3:7440830 |
TA |
T |
1bp_deletion | frameshift_variant | 22 | A15,A18,B101,B11,B16,B31,B55,B61,B63,B82,B90,B99,C1,C15,C27,C36,C50,C52,C60,C72,C73,C79 |
Chr3:7440836 |
T |
TTG |
2bp_insertion | frameshift_variant | 23 | A15,A18,B101,B11,B16,B31,B55,B61,B63,B76,B82,B90,B99,C1,C15,C27,C36,C50,C52,C60,C72,C73,C79 |
Chr3:7440922 |
GA |
G |
1bp_deletion | frameshift_variant | 9 | A11,A3,B124,B135,B49,B78,B79,C56,D10 |
Chr3:7440941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr3:7441041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:7441060 |
AT |
A |
1bp_deletion | frameshift_variant | 118 | A1,A10,A13,A15,A16,A18,A19,A2,A20,A22,A25,A8,B10,B102,B104,B105,B109,B110,B111,B112,B113,B114,B118,B119,B120,B121,B122,B124,B130,B131,B134,B135,B137,B139,B14,B17,B19,B21,B22,B23,B26,B28,B29,B30,B31,B36,B37,B38,B42,B44,B45,B48,B49,B51,B53,B6,B61,B63,B65,B73,B75,B76,B79,B81,B82,B84,B88,B91,B92,B93,B94,B98,B99,C1,C10,C11,C13,C15,C16,C18,C24,C26,C27,C28,C3,C32,C36,C37,C38,C40,C46,C47,C48,C49,C5,C52,C54,C56,C58,C59,C64,C66,C67,C68,C69,C71,C72,C76,C77,C79,C8,C80,C81,C87,C9,D1,D3,D5 |
Chr3:7441098 |
T |
TA |
1bp_insertion | frameshift_variant | 46 | A1,A23,A24,A9,B100,B101,B112,B118,B124,B129,B132,B15,B21,B27,B30,B36,B43,B44,B48,B55,B6,B61,B63,B65,B76,B82,B91,B94,C11,C12,C15,C17,C41,C47,C52,C57,C58,C64,C67,C68,C76,C78,C81,C87,D1,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802945.1PF00067
p450 19-450 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802945.1 |
Pfam | PF00067 |
p450 | Domain | 19 | 450 | 2.5e-95 | 320.7 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。