当前解析结果
SmilChr03G000671| 统一新 Gene ID | SmilChr03G000671 |
|---|---|
| 名称 | SmilChr03G000671 |
| 描述 | uncharacterized SmilChr03G000671 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7517664 - 7519067 / - |
| NCBI Gene ID | LOC131018240 |
|---|---|
| GeneID | 131018240 |
| locus_tag | - |
| NCBI Name | LOC131018240 |
| 原始查询 | SmilChr03G000671 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium |
| 产物 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G05270 (AT1G05270)TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=44.1; qcov=0.727; evalue=2.93e-30; confidence=medium |
| Rice | Os05g0499500- identity=41.5; qcov=0.759; evalue=5.24e-25; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018240 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057802947.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057802947.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802947.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802947.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802947.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7517686 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C79 |
Chr3:7517686 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C79 |
Chr3:7517829 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | A5,B37 |
Chr3:7517829 |
CA |
C |
1bp_deletion | CDS_variant | 2 | A5,B37 |
Chr3:7517844 |
C |
CAA |
2bp_insertion | frameshift_variant | 1 | B37 |
Chr3:7517844 |
C |
CAA |
2bp_insertion | CDS_variant | 1 | B37 |
Chr3:7517872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B113,C30,C48,D6 |
Chr3:7518014 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B137,B7,B91 |
Chr3:7518014 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B137,B7,B91 |
Chr3:7518016 |
CAA |
C |
2bp_deletion | frameshift_variant | 3 | B137,B7,B91 |
Chr3:7518016 |
CAA |
C |
2bp_deletion | CDS_variant | 3 | B137,B7,B91 |
Chr3:7518019 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B137,B7,B91 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。