当前解析结果
SmilChr03G000676| 统一新 Gene ID | SmilChr03G000676 |
|---|---|
| 名称 | SmilChr03G000676 |
| 描述 | uncharacterized SmilChr03G000676 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7550075 - 7552020 / + |
| NCBI Gene ID | LOC131017282 |
|---|---|
| GeneID | 131017282 |
| locus_tag | - |
| NCBI Name | LOC131017282 |
| 原始查询 | SmilChr03G000676 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200]; symbol=AT2G36290; hit=AT2G36290; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200]; symbol=AT2G36290; hit=AT2G36290; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G36290 (AT2G36290)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200] identity=59.9; qcov=0.949; evalue=7.87e-153; confidence=high |
| Rice | Os02g0532300 (P0605D08.22-2)- identity=57.5; qcov=0.929; evalue=7.03e-143; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017282 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057801990.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057801990.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801990.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801990.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801990.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7550647 |
AT |
A |
1bp_deletion | frameshift_variant | 15 | A8,B11,B12,B122,B55,B67,B9,B90,B92,C37,C4,C46,C54,C8,C82 |
Chr3:7550650 |
T |
TA |
1bp_insertion | frameshift_variant | 15 | A8,B11,B12,B122,B55,B67,B9,B90,B92,C37,C4,C46,C54,C8,C82 |
Chr3:7550705 |
AAG |
A |
2bp_deletion | frameshift_variant | 1 | B100 |
Chr3:7550705 |
AAG |
A |
2bp_deletion | CDS_variant | 1 | B100 |
Chr3:7550741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B64 |
Chr3:7550744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B41 |
Chr3:7550805 |
ATG |
A |
2bp_deletion | frameshift_variant | 20 | A1,A23,B101,B122,B30,B32,B36,B60,B62,B64,B67,B79,B84,B90,B92,C25,C31,C57,C7,D3 |
Chr3:7550809 |
A |
AAT |
2bp_insertion | frameshift_variant | 20 | A1,A23,B101,B122,B30,B32,B36,B60,B62,B64,B67,B79,B84,B90,B92,C25,C31,C57,C7,D3 |
Chr3:7550818 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B118,B127,B71,B98 |
Chr3:7550818 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B118,B127,B71,B98 |
Chr3:7550866 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | C31 |
Chr3:7550866 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801990.1PF12146
Hydrolase_4 69-189 aa
PF00561
Abhydrolase_1 73-335 aa
PF12697
Abhydrolase_6 73-338 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801990.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 69 | 189 | 5.6e-09 | 36.4 | Serine aminopeptidase, S33 |
XP_057801990.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 73 | 335 | 4.1e-19 | 69.9 | alpha/beta hydrolase fold |
XP_057801990.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 73 | 338 | 2.9e-14 | 55.0 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。