Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000681`

染色体: Chr03 坐标: 7601612-7614503 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000681`
名称	SmilChr03G000681
描述	uncharacterized SmilChr03G000681
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7601612 - 7614503 / `+`

ID 对照

NCBI Gene ID	`LOC131017309`
GeneID	`131017309`
locus_tag	`-`
NCBI Name	`LOC131017309`
原始查询	`SmilChr03G000681`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high
产物	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high
Arabidopsis	`AT1G05270` (AT1G05270) TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=45.3; qcov=0.76; evalue=7.04e-65; confidence=high
Rice	`Os05g0499500` - identity=41.7; qcov=0.782; evalue=9.82e-61; confidence=medium
GO	-
KEGG	-
Pfam	PF01963 (TraB_PrgY_gumN)
InterPro	-
eggNOG	-
NR	GeneID:131017309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057802001.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057802001.1`
3	Mitochondrion	线粒体	0.40000	`XP_057802001.1`
4	Nucleus	细胞核	0.00000	`XP_057802001.1`
5	Chromosome	染色体	0.00000	`XP_057802001.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7601892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:7607307`	`C`	`CA`	1bp_insertion	frameshift_variant	4	A22,B63,B83,C27
`Chr3:7607307`	`C`	`CA`	1bp_insertion	CDS_variant	4	A22,B63,B83,C27
`Chr3:7607456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,D11
`Chr3:7607529`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B111
`Chr3:7607529`	`CT`	`C`	1bp_deletion	CDS_variant	1	B111
`Chr3:7607969`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A22,B63,B83,C27
`Chr3:7607969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B63,B83,C27
`Chr3:7607970`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B140,B44,B53,B69,C14,C20,D11
`Chr3:7607993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B98,C14,C48,D6
`Chr3:7608101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C35,D1
`Chr3:7608496`	`C`	`T`	EMS_canonical_SNV	stop_gained	10	A13,B114,B25,B8,B90,B92,C33,C41,C75,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802001.1

332 aa

166

332

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 253-317 aa

XP_057802002.1

325 aa

162

325

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 246-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802001.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	253	317	6.8e-13	49.8	TraB/PrgY/gumN family
`XP_057802002.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	246	310	1.8e-09	38.6	TraB/PrgY/gumN family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946019.1
CCCTTCCCCACGAATCCCATTTTCCCCAAACTTCATCCTCTGTAAATTACAAGCCCCCCCGACTCGCATTTCCCCCAAACCTCATTCTCTGTAATTACACACACAACCTCCTCCCCACCCAGCTTTCCCCTTCCTCACGAATCTGATTTCCCCTAAATTTCATTATCTGTAATTACACCATAACATCTGCAGCTCATACATTTTTTCTTTCACATGCTTGAGTTCGAGTATAGAAATTGATGTTGCCGGCAGTTGGTGTC...

XM_057946018.1
CCCTTCCCCACGAATCCCATTTTCCCCAAACTTCATCCTCTGTAAATTACAAGCCCCCCCGACTCGCATTTCCCCCAAACCTCATTCTCTGTAATTACACACACAACCTCCTCCCCACCCAGCTTTCCCCTTCCTCACGAATCTGATTTCCCCTAAATTTCATTATCTGTAATTACACCATAACATCTGCAGCTCATACATTTTTTCTTTCACATGCTTGAGTTCGAGTATAGAAATTGATGTTGCCGGCAGTTGGTGTC...

CDS

2 records

下载 CDS FASTA

LOC131017309
ATGTTGCCGGCAGTTGGTGTCGACGACGGTGGTGATGGAAGCGGCGGTGAGCTCGCTGTAACAGAGACCAAAATTTCGCCCAAAATCGGAAGTAGCCAAAAGATGTACAGATTAAACCGTCTCAATTCCCCCAATCACCTCGCCGCCGCCGCCGCCGTGCTCAGAACGAATATCAGTCACTTCTCTCCCGCATCGACAGCCGGAATCAGTGATACCGGCAATACTTATGCGAGGAATAGGGGAAAAAAGCTGACGGAGCT...

Protein

2 records

下载 Protein FASTA

XP_057802001.1
MLPAVGVDDGGDGSGGELAVTETKISPKIGSSQKMYRLNRLNSPNHLAAAAAVLRTNISHFSPASTAGISDTGNTYARNRGKKLTELSRSVVMLTCDSSADGGICNVYLVGSNHDCPKSWEEVRAAVRFLKPEVVFLELCSNREYLLRRERIKVPTMREMVEMWKKNYKLSWILYHWYTTKRGSRLEVEDDGEFMAANDEAKKYGAKVILGDRLIDITNQRYIAKTSIWQFLTVQFNECSLPNDIVEKASNGKYNAHAVH...

XP_057802002.1
MLPAVGVDDGGDGSGGELAVTETKISPKIGSSQKMYRLNRLNSPNHLAAAAAVLRTNISHFSPASTAGISDTGNTYARNRGKKLTELSRSVVMLTCDSSADGGICNVYLVGSNHDCPKSWEEVRAAVVFLELCSNREYLLRRERIKVPTMREMVEMWKKNYKLSWILYHWYTTKRGSRLEVEDDGEFMAANDEAKKYGAKVILGDRLIDITNQRYIAKTSIWQFLTVQFNECSLPNDIVEKASNGKYNAHAVHRFNQELA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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