当前解析结果
SmilChr03G000696| 统一新 Gene ID | SmilChr03G000696 |
|---|---|
| 名称 | SmilChr03G000696 |
| 描述 | uncharacterized SmilChr03G000696 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7763238 - 7769306 / - |
| NCBI Gene ID | LOC131017321 |
|---|---|
| GeneID | 131017321 |
| locus_tag | - |
| NCBI Name | LOC131017321 |
| 原始查询 | SmilChr03G000696 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Tudor/PWWP/MBT superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820124]; symbol=AT3G09670; hit=AT3G09670; species=arabidopsis; confidence=weak |
| 产物 | Tudor/PWWP/MBT superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820124]; symbol=AT3G09670; hit=AT3G09670; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G09670 (AT3G09670)Tudor/PWWP/MBT superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820124] identity=54.1; qcov=0.13; evalue=1.88e-57; confidence=weak |
| Rice | Os05g0463500- identity=39.9; qcov=0.199; evalue=1.93e-55; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00855 (PWWP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017321 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802017.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057802017.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057802017.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057802017.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057802017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7764514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr3:7764549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr3:7764770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C12 |
Chr3:7764853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr3:7764931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:7764966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B87 |
Chr3:7765035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr3:7765166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,B47,C45 |
Chr3:7765207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr3:7765278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,C78,C87,D5 |
Chr3:7765487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C20 |
Chr3:7765500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B47,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802017.1PF00855
PWWP 878-961 aa
XP_057802018.1PF00855
PWWP 857-940 aa
XP_057802019.1PF00855
PWWP 846-929 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802017.1 |
Pfam | PF00855 |
PWWP | Domain | 878 | 961 | 2.7e-19 | 70.2 | PWWP domain |
XP_057802018.1 |
Pfam | PF00855 |
PWWP | Domain | 857 | 940 | 2.7e-19 | 70.2 | PWWP domain |
XP_057802019.1 |
Pfam | PF00855 |
PWWP | Domain | 846 | 929 | 2.6e-19 | 70.2 | PWWP domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。