Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000697`

染色体: Chr03 坐标: 7772687-7776415 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000697`
名称	SmilChr03G000697
描述	4-coumarate--CoA ligase-like 6
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7772687 - 7776415 / `-`

ID 对照

NCBI Gene ID	`LOC131017323`
GeneID	`131017323`
locus_tag	`-`
NCBI Name	`LOC131017323`
原始查询	`SmilChr03G000697`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	4-coumarate--CoA ligase-like 6
产物	4-coumarate--CoA ligase-like 6
Arabidopsis	`AT4G19010` (AT4G19010) AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827639] identity=59.6; qcov=1; evalue=0; confidence=high
Rice	`Os08g0143300` (OsACS3) - identity=56.1; qcov=1.01; evalue=6.62e-169; confidence=high
GO	GO:0005777 (peroxisome); GO:0006744 (ubiquinone biosynthetic process); GO:0016405 (CoA-ligase activity)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00501 (AMP-binding); PF13193 (AMP-binding_C)
InterPro	-
eggNOG	-
NR	GeneID:131017323

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057802020.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057802022.1`
3	Peroxisome membrane	过氧化物酶体膜	0.20000	`XP_057802022.1`
4	Nucleus	细胞核	0.00000	`XP_057802020.1`
5	Chromosome	染色体	0.00000	`XP_057802020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7772948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B63,B81,B83,C27
`Chr3:7773973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:7774006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C20
`Chr3:7774412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A9,B136,B26
`Chr3:7774415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:7774870`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B58
`Chr3:7774870`	`TGG`	`T`	2bp_deletion	CDS_variant	1	B58
`Chr3:7774875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,C78,C87
`Chr3:7774957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,B35,D10
`Chr3:7775029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B10
`Chr3:7775163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B35,B69,D10
`Chr3:7775307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802020.1

578 aa

289

578

AMP-binding

AMP-binding_C

PF00501 AMP-binding 71-438 aa PF13193 AMP-binding_C 490-564 aa

XP_057802021.1

578 aa

289

578

AMP-binding

AMP-binding_C

PF00501 AMP-binding 71-438 aa PF13193 AMP-binding_C 490-564 aa

XP_057802022.1

480 aa

240

480

AMP-binding

AMP-binding_C

PF00501 AMP-binding 1-340 aa PF13193 AMP-binding_C 392-466 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802020.1`	Pfam	`PF00501`	AMP-binding	Family	71	438	4.3e-80	270.1	AMP-binding enzyme
`XP_057802020.1`	Pfam	`PF13193`	AMP-binding_C	Domain	490	564	1.8e-17	64.7	AMP-binding enzyme C-terminal domain
`XP_057802021.1`	Pfam	`PF00501`	AMP-binding	Family	71	438	4.3e-80	270.1	AMP-binding enzyme
`XP_057802021.1`	Pfam	`PF13193`	AMP-binding_C	Domain	490	564	1.8e-17	64.7	AMP-binding enzyme C-terminal domain
`XP_057802022.1`	Pfam	`PF00501`	AMP-binding	Family	1	340	4e-77	260.3	AMP-binding enzyme
`XP_057802022.1`	Pfam	`PF13193`	AMP-binding_C	Domain	392	466	1.2e-17	65.3	AMP-binding enzyme C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946039.1
GGAATAATCAAATCCTAAAATGTTTCGCCATCTTTCTTCCCGTGTCTATTTCCGCCTTAGCTATTAGCGGCCCTTCAAGTTCCATCAACAATCTTCTTCAGCTTTCTCCACTTTCAGCCACAAATACTCATATATGCTTTAATCGCTACTATTTTCGAACTAAATTCTTTCTTTTTATCCAAATCGGCTCTCTGTGTCTCGCGAATTTCAGGACACACAAATTTTTCTTTTGTTAAAAATGCAGTCTTTACGTTTTTTGA...

XM_057946037.1
GGAATAATCAAATCCTAAAATGTTTCGCCATCTTTCTTCCCGTGTCTATTTCCGCCTTAGCTATTAGCGGCCCTTCAAGTTCCATCAACAATCTTCTTCAGCTTTCTCCACTTTCAGCCACAAATACTCATATATGCTTTAATCGCTACTATTTTCGAACTAAATTCTTTCTTTTTATCCAAATCGGCTCTCTGTGTCTCGCGAATTTCAGGACACACAAATTTTTCTTTTGTTAAAAATGCAGTCTTTACGTTTTTTGA...

CDS

3 records

下载 CDS FASTA

LOC131017323
ATGGCTGCATTGTCGAAAGCCCACGTCGAGTTGCAGAGCACAGAAGAAGAGTATGATGGGATTGATGAAACATCAAAATCAAGAAACTTGAGAGGCTCCATTAATCCTTCTTGGTATTCTCCTCAAACAGGAATCTATTCAAGCAAATACCCGTGTATAAACCTGCCCTCTGATCCCTTTCTTGATGTTGTTTCATTCATTTTCTCACGTAAGCATAATGGGCTTCATGCACTCGTTGATTCTGCATCTGGGCTTTCGGT...

Protein

3 records

下载 Protein FASTA

XP_057802020.1
MAALSKAHVELQSTEEEYDGIDETSKSRNLRGSINPSWYSPQTGIYSSKYPCINLPSDPFLDVVSFIFSRKHNGLHALVDSASGLSVPYSKLSPLVKSMAAGLHYHFGVKQGDVILILLPNSVCFPLIFLGALSLGAVVTPMNPLSNMLEIKKQVLDCNVTLAFAATGKVDELVSALRGCHVVGVPEALGMNSLSSDGSVFHKLISSDPAMAPMPRIAQQDTAAILYSSGTTGRSKGVMLSHGNFIAMIELFVRFEASLY...

XP_057802021.1
MAALSKAHVELQSTEEEYDGIDETSKSRNLRGSINPSWYSPQTGIYSSKYPCINLPSDPFLDVVSFIFSRKHNGLHALVDSASGLSVPYSKLSPLVKSMAAGLHYHFGVKQGDVILILLPNSVCFPLIFLGALSLGAVVTPMNPLSNMLEIKKQVLDCNVTLAFAATGKVDELVSALRGCHVVGVPEALGMNSLSSDGSVFHKLISSDPAMAPMPRIAQQDTAAILYSSGTTGRSKGVMLSHGNFIAMIELFVRFEASLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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