Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000698`

染色体: Chr03 坐标: 7787199-7801915 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000698`
名称	SmilChr03G000698
描述	probable phosphoinositide phosphatase SAC9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7787199 - 7801915 / `-`

ID 对照

NCBI Gene ID	`LOC131017324`
GeneID	`131017324`
locus_tag	`-`
NCBI Name	`LOC131017324`
原始查询	`SmilChr03G000698`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phosphoinositide phosphatase SAC9
产物	probable phosphoinositide phosphatase SAC9
Arabidopsis	`AT3G59770` (SAC9) sacI homology domain-containing protein / WW domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:825146] identity=63.8; qcov=1; evalue=0; confidence=high
Rice	`Os01g0355600` - identity=47.9; qcov=0.677; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016791 (phosphatase activity)
KEGG	-
Pfam	PF00397 (WW); PF02383 (Syja_N); PF24765 (SAC9_C); PF24789 (SAC9_GBDL_2nd); PF24790 (SAC9_GBDL_1st); PF24791 (SAC9_C8D)
InterPro	-
eggNOG	-
NR	GeneID:131017324

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057802024.1`
2	Cytosol	细胞质基质	0.60000	`XP_057802024.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057802024.1`
4	Nucleus	细胞核	0.00000	`XP_057802024.1`
5	Chromosome	染色体	0.00000	`XP_057802024.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7788226`	`TG`	`T`	1bp_deletion	frameshift_variant	4	A16,A9,B136,B26
`Chr3:7788226`	`TG`	`T`	1bp_deletion	CDS_variant	4	A16,A9,B136,B26
`Chr3:7788230`	`T`	`TA`	1bp_insertion	frameshift_variant	4	A16,A9,B136,B26
`Chr3:7788230`	`T`	`TA`	1bp_insertion	CDS_variant	4	A16,A9,B136,B26
`Chr3:7788282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B87,D1
`Chr3:7788358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C20
`Chr3:7788911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr3:7788955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:7789315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:7789622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C21,C4
`Chr3:7790664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:7791771`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802024.1

1655 aa

828

1655

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 85-391 aa PF00397 WW 509-539 aa PF24790 SAC9_GBDL_1st 653-839 aa PF24791 SAC9_C8D 1083-1193 aa PF24789 SAC9_GBDL_2nd 1254-1455 aa PF24765 SAC9_C 1481-1655 aa

XP_057802025.1

1654 aa

827

1654

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 85-391 aa PF00397 WW 509-539 aa PF24790 SAC9_GBDL_1st 653-838 aa PF24791 SAC9_C8D 1082-1192 aa PF24789 SAC9_GBDL_2nd 1253-1454 aa PF24765 SAC9_C 1480-1654 aa

XP_057802026.1

1654 aa

827

1654

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 85-391 aa PF00397 WW 509-539 aa PF24790 SAC9_GBDL_1st 653-839 aa PF24791 SAC9_C8D 1082-1192 aa PF24789 SAC9_GBDL_2nd 1253-1454 aa PF24765 SAC9_C 1480-1654 aa

XP_057802027.1

1654 aa

827

1654

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 84-390 aa PF00397 WW 508-538 aa PF24790 SAC9_GBDL_1st 652-838 aa PF24791 SAC9_C8D 1082-1192 aa PF24789 SAC9_GBDL_2nd 1253-1454 aa PF24765 SAC9_C 1480-1654 aa

XP_057802028.1

1653 aa

826

1653

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 84-390 aa PF00397 WW 508-538 aa PF24790 SAC9_GBDL_1st 652-837 aa PF24791 SAC9_C8D 1081-1191 aa PF24789 SAC9_GBDL_2nd 1252-1453 aa PF24765 SAC9_C 1479-1653 aa

XP_057802029.1

1653 aa

826

1653

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 85-391 aa PF00397 WW 509-539 aa PF24790 SAC9_GBDL_1st 653-838 aa PF24791 SAC9_C8D 1081-1191 aa PF24789 SAC9_GBDL_2nd 1252-1453 aa PF24765 SAC9_C 1479-1653 aa

XP_057802030.1

1652 aa

826

1652

Syja_N

SAC9_GBDL_1st

SAC9_C8D

SAC9_GBDL_2nd

SAC9_C

PF02383 Syja_N 84-390 aa PF00397 WW 508-538 aa PF24790 SAC9_GBDL_1st 652-837 aa PF24791 SAC9_C8D 1080-1190 aa PF24789 SAC9_GBDL_2nd 1251-1452 aa PF24765 SAC9_C 1478-1652 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802024.1`	Pfam	`PF02383`	Syja_N	Family	85	391	1.9e-42	146.4	SacI homology domain
`XP_057802024.1`	Pfam	`PF00397`	WW	Domain	509	539	1.7e-12	47.8	WW domain
`XP_057802024.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	653	839	2.5e-94	314.7	SAC9 first GBDL domain
`XP_057802024.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1083	1193	2.3e-16	60.8	SAC9 C8D domain
`XP_057802024.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1254	1455	1.8e-99	332.1	SAC9 second GBDL domain
`XP_057802024.1`	Pfam	`PF24765`	SAC9_C	Domain	1481	1655	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802025.1`	Pfam	`PF02383`	Syja_N	Family	85	391	1.9e-42	146.4	SacI homology domain
`XP_057802025.1`	Pfam	`PF00397`	WW	Domain	509	539	1.7e-12	47.8	WW domain
`XP_057802025.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	653	838	3.3e-96	320.9	SAC9 first GBDL domain
`XP_057802025.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1082	1192	2.3e-16	60.8	SAC9 C8D domain
`XP_057802025.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1253	1454	7e-100	333.5	SAC9 second GBDL domain
`XP_057802025.1`	Pfam	`PF24765`	SAC9_C	Domain	1480	1654	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802026.1`	Pfam	`PF02383`	Syja_N	Family	85	391	1.9e-42	146.4	SacI homology domain
`XP_057802026.1`	Pfam	`PF00397`	WW	Domain	509	539	1.6e-12	47.9	WW domain
`XP_057802026.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	653	839	2.5e-94	314.7	SAC9 first GBDL domain
`XP_057802026.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1082	1192	2.3e-16	60.8	SAC9 C8D domain
`XP_057802026.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1253	1454	1.8e-99	332.1	SAC9 second GBDL domain
`XP_057802026.1`	Pfam	`PF24765`	SAC9_C	Domain	1480	1654	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802027.1`	Pfam	`PF02383`	Syja_N	Family	84	390	1.9e-42	146.4	SacI homology domain
`XP_057802027.1`	Pfam	`PF00397`	WW	Domain	508	538	1.7e-12	47.8	WW domain
`XP_057802027.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	652	838	2.5e-94	314.7	SAC9 first GBDL domain
`XP_057802027.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1082	1192	2.3e-16	60.8	SAC9 C8D domain
`XP_057802027.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1253	1454	1.8e-99	332.1	SAC9 second GBDL domain
`XP_057802027.1`	Pfam	`PF24765`	SAC9_C	Domain	1480	1654	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802028.1`	Pfam	`PF02383`	Syja_N	Family	84	390	1.9e-42	146.4	SacI homology domain
`XP_057802028.1`	Pfam	`PF00397`	WW	Domain	508	538	1.7e-12	47.8	WW domain
`XP_057802028.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	652	837	3.3e-96	320.9	SAC9 first GBDL domain
`XP_057802028.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1081	1191	2.3e-16	60.8	SAC9 C8D domain
`XP_057802028.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1252	1453	7e-100	333.5	SAC9 second GBDL domain
`XP_057802028.1`	Pfam	`PF24765`	SAC9_C	Domain	1479	1653	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802029.1`	Pfam	`PF02383`	Syja_N	Family	85	391	1.9e-42	146.4	SacI homology domain
`XP_057802029.1`	Pfam	`PF00397`	WW	Domain	509	539	1.6e-12	47.9	WW domain
`XP_057802029.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	653	838	3.3e-96	320.9	SAC9 first GBDL domain
`XP_057802029.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1081	1191	2.3e-16	60.8	SAC9 C8D domain
`XP_057802029.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1252	1453	7e-100	333.5	SAC9 second GBDL domain
`XP_057802029.1`	Pfam	`PF24765`	SAC9_C	Domain	1479	1653	6.1e-86	287.4	SAC9 C-terminal domain
`XP_057802030.1`	Pfam	`PF02383`	Syja_N	Family	84	390	1.9e-42	146.4	SacI homology domain
`XP_057802030.1`	Pfam	`PF00397`	WW	Domain	508	538	1.6e-12	47.9	WW domain
`XP_057802030.1`	Pfam	`PF24790`	SAC9_GBDL_1st	Domain	652	837	3.3e-96	320.9	SAC9 first GBDL domain
`XP_057802030.1`	Pfam	`PF24791`	SAC9_C8D	Domain	1080	1190	2.3e-16	60.8	SAC9 C8D domain
`XP_057802030.1`	Pfam	`PF24789`	SAC9_GBDL_2nd	Domain	1251	1452	7e-100	333.5	SAC9 second GBDL domain
`XP_057802030.1`	Pfam	`PF24765`	SAC9_C	Domain	1478	1652	6.1e-86	287.4	SAC9 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XR_009099550.1
TTTCTTTCACTTTCATGTTTGGTTTCGCTAAAGTTGCTATTCTCTTAAAATGTTCGCGTCTCTTCAACCTTTACGATTTTTCCTTGTTTCTCAATTTTGAAGGCTGATCTGTCTACATGTTCCTATTTTGATTCTGGCCACGGCTGCCCTCTCCCCTCCTCCGCCGTCTTCCCGCCGGAGCCACCGCCACTCCTCTCTAACAAGCAGCCATCGAACGCTCGCAGCTACCGGCCGGCCAATCCGAGGACGATCTGGCTGTG...

XR_009099549.1
TTTCTTTCACTTTCATGTTTGGTTTCGCTAAAGTTGCTATTCTCTTAAAATGTTCGCGTCTCTTCAACCTTTACGATTTTTCCTTGTTTCTCAATTTTGAAGGCTGATCTGTCTACATGTTCCTATTTTGATTCTGGCCACGGCTGCCCTCTCCCCTCCTCCGCCGTCTTCCCGCCGGAGCCACCGCCACTCCTCTCTAACAAGCAGCCATCGAACGCTCGCAGCTACCGGCCGGCCAATCCGAGGACGATCTGGCTGTG...

CDS

7 records

下载 CDS FASTA

LOC131017324
ATGGAATCATCTGGTTCTCTAAGGGATACATCTGTTGTTGTTGTCACATTGGACTCAAGTGAAGTGTATATTATTGTCAGTTTGTCTACTAGGACTGACACTCAGGTTATCTATGTTGATCCTACAACTGGGGAACTTTGTTATACTGCTAAGCAGGGTTATGATGTTTTCAAATCACAAAATGAAGCATTAGATTGCATCACAAATGGGTCAAAATGGCCTTGTAAGAGTATAACACATGCCCGGGCACTGTTAGGCTA...

Protein

7 records

下载 Protein FASTA

XP_057802024.1
MESSAGSLRDTSVVVVTLDSSEVYIIVSLSTRTDTQVIYVDPTTGELCYTAKQGYDVFKSQNEALDCITNGSKWPCKSITHARALLGYAALGSFGLLLVATRLTASIPNLPGGGCVYSVTETQWIKISLQNPQAQSKTEIKNIQELTELDIDGKHYFCETRDITRPFPSRMSVQNPDDEFVWNKWFAMPFRKIGLLQHCVILLQGFAECKTFGSLGQQEGVVALTARRSRLHPGTRYLARGINSCYSTGNEVECEQLVWI...

XP_057802025.1
MESSAGSLRDTSVVVVTLDSSEVYIIVSLSTRTDTQVIYVDPTTGELCYTAKQGYDVFKSQNEALDCITNGSKWPCKSITHARALLGYAALGSFGLLLVATRLTASIPNLPGGGCVYSVTETQWIKISLQNPQAQSKTEIKNIQELTELDIDGKHYFCETRDITRPFPSRMSVQNPDDEFVWNKWFAMPFRKIGLLQHCVILLQGFAECKTFGSLGQQEGVVALTARRSRLHPGTRYLARGINSCYSTGNEVECEQLVWI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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