Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000704`

染色体: Chr03 坐标: 7849562-7854237 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000704`
名称	SmilChr03G000704
描述	histone deacetylase 18-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7849562 - 7854237 / `+`

ID 对照

NCBI Gene ID	`LOC131017329`
GeneID	`131017329`
locus_tag	`-`
NCBI Name	`LOC131017329`
原始查询	`SmilChr03G000704`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone deacetylase 18-like
产物	histone deacetylase 18-like
Arabidopsis	`AT5G61060` (HDA05) histone deacetylase 5 [Source:NCBI gene (formerly Entrezgene);Acc:836227] identity=71.8; qcov=0.364; evalue=1.06e-109; confidence=low
Rice	`Os07g0602200` - identity=64.4; qcov=0.385; evalue=6.72e-105; confidence=low
GO	GO:0000118 (histone deacetylase complex); GO:0004407 (histone deacetylase activity); GO:0006325 (chromatin organization); GO:0016575 (GO:0016575)
KEGG	-
Pfam	PF00850 (Hist_deacetyl)
InterPro	-
eggNOG	-
NR	GeneID:131017329

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802034.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802035.1`
3	Cytosol	细胞质基质	1.00000	`XP_057802035.1`
4	Nucleoplasm	核质	0.60000	`XP_057802035.1`
5	Chromosome	染色体	0.00000	`XP_057802034.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7849846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B15
`Chr3:7851018`	`G`	`GTA`	2bp_insertion	frameshift_variant	14	B15,B17,B21,B27,B30,B78,C11,C16,C23,C56,C60,C63,C69,C83
`Chr3:7851130`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	B20
`Chr3:7851130`	`ACT`	`A`	2bp_deletion	CDS_variant	1	B20
`Chr3:7851164`	`T`	`TA`	1bp_insertion	frameshift_variant	19	A19,A24,B107,B120,B14,B20,B58,B60,B64,B65,B76,B84,C16,C43,C52,C57,C74,C80,C84
`Chr3:7851166`	`CTT`	`C`	2bp_deletion	frameshift_variant	19	A19,A24,B107,B120,B14,B20,B58,B60,B64,B65,B76,B84,C16,C43,C52,C57,C74,C80,C84
`Chr3:7851635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr3:7851647`	`A`	`AC`	1bp_insertion	frameshift_variant	153	A1,A10,A18,A19,A2,A20,A21,A23,A25,A3,A8,A9,B10,B100,B101,B104,B107,B109,B112,B113,B114,B115,B117,B119,B120,B121,B123,B125,B126,B127,B128,B13,B130,B132,B134,B135,B136,B137,B139,B14,B19,B2,B21,B22,B23,B24,B25,B26,B27,B28,B3,B33,B34,B35,B36,B37,B38,B39,B40,B46,B48,B49,B5,B51,B52,B53,B55,B57,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B71,B74,B75,B76,B77,B78,B80,B81,B84,B86,B87,B89,B94,B95,B96,B98,C10,C11,C13,C14,C16,C17,C18,C19,C2,C21,C23,C24,C26,C27,C28,C30,C31,C35,C37,C38,C39,C4,C40,C45,C47,C48,C49,C5,C50,C53,C54,C55,C58,C60,C61,C62,C65,C69,C7,C70,C72,C73,C74,C78,C79,C80,C83,C85,C86,C87,D1,D10,D11,D2,D3,D4,D7,D9
`Chr3:7851661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B41
`Chr3:7851977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:7851991`	`C`	`CT`	1bp_insertion	frameshift_variant	9	B110,B138,B75,B78,C19,C46,C55,C73,C74
`Chr3:7852032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802034.1

757 aa

378

757

Hist_deacetyl

PF00850 Hist_deacetyl 34-335 aa

XP_057802035.1

605 aa

302

605

Hist_deacetyl

PF00850 Hist_deacetyl 1-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802034.1`	Pfam	`PF00850`	Hist_deacetyl	Domain	34	335	5.6e-98	328.7	Histone deacetylase domain
`XP_057802035.1`	Pfam	`PF00850`	Hist_deacetyl	Domain	1	183	2.7e-63	214.8	Histone deacetylase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946051.1
GAAAGAAAGAGCGCCAAAAAATGAGAAAAGGAAAGGGAGACTGCAAATCGTTTAAATTCCAAAGGATTCTCTGATTCTCTCTCACTTCCTCTGTACTGTTGCACCTGCAAAATGCAAACTTGAGCCACTATGCTTCATTACAGCTGAGAAAGAAAAGAAAAAAGGTGAAGAAAATGAGCAGAAACAACGATAGTGTTAGCGGTAGAGATGGGCGGGTGGGTTTGATATTTGACGAGCGGATGTGTAAACACTACGCTCCT...

XM_057946052.1
AAAAAGCATATCAGTTTGATTAAGAATATTAGTTCCAGAAACACTCAATCAAAGAGAGAAAGAATTGCTGTAAAATTTGACTCTATATATTTCAATGAGGGCTCAACTGAAGCTGCTTGTCTTGCTGCTGGCTCTGTCATAGAGGTATGGCTTTTGAGATTGGCGAACACGACATGTTCTACAATATTTTGCTGCGTAATGTATATTGAAAATGTTAAGAAAGGATGTCTCTGGGAATCATGGAAGTAGCAAGCTGCAGA...

CDS

2 records

下载 CDS FASTA

LOC131017329
ATGAGCAGAAACAACGATAGTGTTAGCGGTAGAGATGGGCGGGTGGGTTTGATATTTGACGAGCGGATGTGTAAACACTACGCTCCTGCTGAAGAGGATCATCCTGAATGCCCTAATCGGATTCGGGTCATCTGGAACCTCCTCGATTCTTCTGGCCTCGCCAAAAGGTGTATTATTTTGAAAGCCAAGGATGCAGAAGATAATCATTTAGCCTTGGTTCATACCAAAAAGCATATCAGTTTGATTAAGAATATTAGTTC...

LOC131017329
ATGGGCTTTTGCCTTTATAACAATGTTGCTATTGCTGCAAGTTATCTTCTGAACGAAAGACAAGAATTGGGGATCAACAAAATCCTTATAGTTGACTGGGATGTACATCATGGAAATGGTACTCAAAATATGTTCTATAAAGATCCTCGAGTACTAGTCTTCTCAGTGCATAGACATGACTTCGGGACTTTCTATCCATCTGGTAATGGTGGCTCATATATCATGACCGGGGAAGGGGAAGGTGCTGGTCACAACATTAA...

Protein

2 records

下载 Protein FASTA

XP_057802034.1
MSRNNDSVSGRDGRVGLIFDERMCKHYAPAEEDHPECPNRIRVIWNLLDSSGLAKRCIILKAKDAEDNHLALVHTKKHISLIKNISSRNTQSKRERIAVKFDSIYFNEGSTEAACLAAGSVIEAAEKVASGEIDSAFAIVRPPGHHAKEGEPMGFCLYNNVAIAASYLLNERQELGINKILIVDWDVHHGNGTQNMFYKDPRVLVFSVHRHDFGTFYPSGNGGSYIMTGEGEGAGHNINVPWEHGQCGDADYLAVWDHIL...

XP_057802035.1
MGFCLYNNVAIAASYLLNERQELGINKILIVDWDVHHGNGTQNMFYKDPRVLVFSVHRHDFGTFYPSGNGGSYIMTGEGEGAGHNINVPWEHGQCGDADYLAVWDHILIPVAKEFKPDIIIISAGFDAAKGDPLGECCVSPNGYSVMLHKLMEFAGGKIVMALEGGYNLNSTASSALACVEALLHNKPPNVVSEARPFASTWRVIQQVCGVLRPYWPVLARIDNNHPTESDPVTSPHVPEKGLLRPCNMSSIKKSTGGEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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