当前解析结果
SmilChr03G000727| 统一新 Gene ID | SmilChr03G000727 |
|---|---|
| 名称 | SmilChr03G000727 |
| 描述 | uncharacterized SmilChr03G000727 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8198009 - 8201286 / - |
| NCBI Gene ID | LOC131017349 |
|---|---|
| GeneID | 131017349 |
| locus_tag | - |
| NCBI Name | LOC131017349 |
| 原始查询 | SmilChr03G000727 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427]; symbol=AT2G28780; hit=AT2G28780; species=arabidopsis; confidence=high |
| 产物 | P-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427]; symbol=AT2G28780; hit=AT2G28780; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G28780 (AT2G28780)P-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427] identity=47.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os11g0100300- identity=33.9; qcov=0.894; evalue=2.25e-88; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF13515 (FUSC_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017349 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802051.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057802051.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057802051.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802051.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802051.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8198091 |
AGC |
A |
2bp_deletion | frameshift_variant | 20 | A19,B104,B105,B114,B130,B135,B136,B138,B20,B22,B26,B40,B49,B70,B71,B79,C13,C37,C75,C78 |
Chr3:8198094 |
GCA |
G |
2bp_deletion | frameshift_variant | 111 | A1,A13,A14,A2,A22,A5,A8,A9,B102,B103,B105,B106,B107,B108,B111,B113,B12,B122,B128,B129,B131,B133,B134,B136,B138,B14,B16,B18,B2,B23,B24,B25,B29,B31,B34,B36,B43,B47,B48,B50,B53,B55,B6,B60,B61,B62,B65,B67,B68,B7,B70,B71,B72,B73,B74,B76,B77,B78,B80,B82,B85,B86,B87,B91,B93,B94,B96,B97,B98,C1,C12,C14,C15,C16,C17,C2,C20,C21,C23,C25,C3,C31,C34,C36,C37,C40,C44,C46,C5,C54,C55,C59,C61,C62,C63,C64,C65,C66,C67,C7,C73,C8,C81,C83,C84,C86,C87,D1,D4,D5,D9 |
Chr3:8198110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B136,B26,C13,C37 |
Chr3:8198281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr3:8198303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr3:8198306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr3:8198348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B14,C12,C24 |
Chr3:8198523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,B36 |
Chr3:8198556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B110,B36 |
Chr3:8198717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,B125,B56,B90,B92 |
Chr3:8198758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr3:8198824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802051.1PF13515
FUSC_2 412-539 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802051.1 |
Pfam | PF13515 |
FUSC_2 | Family | 412 | 539 | 3.1e-14 | 53.9 | Fusaric acid resistance protein-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。