当前解析结果
SmilChr03G000734| 统一新 Gene ID | SmilChr03G000734 |
|---|---|
| 名称 | SmilChr03G000734 |
| 描述 | E3 ubiquitin-protein ligase RING1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8291056 - 8291905 / - |
| NCBI Gene ID | LOC131018253 |
|---|---|
| GeneID | 131018253 |
| locus_tag | - |
| NCBI Name | LOC131018253 |
| 原始查询 | SmilChr03G000734 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RING1-like |
| 产物 | E3 ubiquitin-protein ligase RING1-like |
| Arabidopsis | AT3G19950 (AT3G19950)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821533] identity=50.6; qcov=0.596; evalue=5.31e-19; confidence=low |
| Rice | Os05g0488800 (OsSIRP1)- identity=46.8; qcov=0.541; evalue=9.97e-18; confidence=low |
| GO | GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018253 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057802960.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057802960.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057802960.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802960.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802960.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8291516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,B98 |
Chr3:8291524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C27 |
Chr3:8291579 |
CG |
C |
1bp_deletion | frameshift_variant | 28 | A13,A15,A25,B118,B119,B120,B124,B125,B136,B17,B18,B21,B25,B38,B39,B4,B61,B8,B85,B98,C14,C27,C28,C33,C51,C60,C73,D8 |
Chr3:8291666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr3:8291778 |
G |
GCA |
2bp_insertion | frameshift_variant | 6 | B48,B77,C3,C59,C62,C83 |
Chr3:8291782 |
T |
TG |
1bp_insertion | frameshift_variant | 6 | B48,B77,C3,C59,C62,C83 |
Chr3:8291815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr3:8291831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B37,B5,B95,C9 |
Chr3:8291861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802960.1PF13923
zf-C3HC4_2 63-103 aa
PF12678
zf-rbx1 65-104 aa
PF13639
zf-RING_2 67-104 aa
PF12861
zf-ANAPC11 76-108 aa
PF00097
zf-C3HC4 77-103 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802960.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 63 | 103 | 2.5e-08 | 34.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057802960.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 65 | 104 | 2e-10 | 41.5 | RING-H2 zinc finger domain |
XP_057802960.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 67 | 104 | 1.3e-11 | 45.3 | Ring finger domain |
XP_057802960.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 76 | 108 | 3.1e-06 | 27.8 | Anaphase-promoting complex subunit 11 RING-H2 finger |
XP_057802960.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 77 | 103 | 1.3e-07 | 32.1 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。