当前解析结果
SmilChr03G000752| 统一新 Gene ID | SmilChr03G000752 |
|---|---|
| 名称 | SmilChr03G000752 |
| 描述 | miltiradiene synthase KSL2, chloroplastic-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8591343 - 8605619 / + |
| NCBI Gene ID | LOC131018258 |
|---|---|
| GeneID | 131018258 |
| locus_tag | - |
| NCBI Name | LOC131018258 |
| 原始查询 | SmilChr03G000752 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | miltiradiene synthase KSL2, chloroplastic-like |
| 产物 | miltiradiene synthase KSL2%2C chloroplastic-like |
| Arabidopsis | AT1G79460 (GA2)Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844284] identity=33.8; qcov=0.818; evalue=2.58e-47; confidence=low |
| Rice | Os04g0612000 (KS2)- identity=36; qcov=0.86; evalue=1.25e-58; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018258 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802965.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802965.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802965.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802965.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802965.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8591413 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A7,B127,B18,C18,C33,C37 |
Chr3:8591427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B127,B18,C18,C37 |
Chr3:8591433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr3:8600448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B140,B35 |
Chr3:8600455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B140,B35 |
Chr3:8600490 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | A1,A14 |
Chr3:8600490 |
A |
AG |
1bp_insertion | CDS_variant | 2 | A1,A14 |
Chr3:8600563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B74,C79 |
Chr3:8600576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:8604447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:8604459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B105,B62,B71,C7 |
Chr3:8604515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B101,B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802965.1PF03936
Terpene_synth_C 64-304 aa
PF19086
Terpene_syn_C_2 103-303 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802965.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 64 | 304 | 3.3e-42 | 145.2 | Terpene synthase family, metal binding domain |
XP_057802965.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 103 | 303 | 3.9e-29 | 102.6 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。