当前解析结果
SmilChr03G000756| 统一新 Gene ID | SmilChr03G000756 |
|---|---|
| 名称 | SmilChr03G000756 |
| 描述 | uncharacterized SmilChr03G000756 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8641850 - 8643340 / - |
| NCBI Gene ID | LOC131017376 |
|---|---|
| GeneID | 131017376 |
| locus_tag | - |
| NCBI Name | LOC131017376 |
| 原始查询 | SmilChr03G000756 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:815821]; symbol=AT2G13350; hit=AT2G13350; species=arabidopsis; confidence=low |
| 产物 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:815821]; symbol=AT2G13350; hit=AT2G13350; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G13350 (AT2G13350)Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:815821] identity=29.5; qcov=1.07; evalue=6.45e-46; confidence=low |
| Rice | Os01g0659800- identity=36.4; qcov=0.399; evalue=2.85e-14; confidence=low |
| GO | GO:0006952 (defense response) |
| KEGG | - |
| Pfam | PF00168 (C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017376 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802089.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802089.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802089.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802089.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802089.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8642106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr3:8642142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C62 |
Chr3:8642151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B98 |
Chr3:8642261 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B39 |
Chr3:8642261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr3:8642322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C62 |
Chr3:8642331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B98 |
Chr3:8642356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C21 |
Chr3:8642448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B98 |
Chr3:8642504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C62 |
Chr3:8642514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,B9,C22 |
Chr3:8642519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802089.1PF00168
C2 35-126 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802089.1 |
Pfam | PF00168 |
C2 | Domain | 35 | 126 | 1.9e-14 | 54.4 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。