Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G000757`

Chromosome: Chr03 Coordinates: 8644666-8646235 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G000757`
Name	SmilChr03G000757
Description	F-box/FBD/LRR-repeat protein At3g26920-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	8644666 - 8646235 / `+`

ID Mapping

NCBI Gene ID	`LOC131018259`
GeneID	`131018259`
locus_tag	`-`
NCBI Name	`LOC131018259`
Original query	`SmilChr03G000757`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	F-box/FBD/LRR-repeat protein At3g26920-like
Product	F-box/FBD/LRR-repeat protein At3g26920-like
Arabidopsis	`AT5G56810` (AT5G56810) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835783] identity=25.6; qcov=0.931; evalue=9.75e-10; confidence=low
Rice	`Os11g0532600` (OsFbox601) - identity=26.2; qcov=0.982; evalue=2.05e-14; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131018259

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802966.1`
2	Chromosome	染色体	0.00000	`XP_057802966.1`
3	Centromere	着丝粒	0.00000	`XP_057802966.1`
4	Chromatin	染色质	0.00000	`XP_057802966.1`
5	Telomere	端粒	0.00000	`XP_057802966.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:8644891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr3:8644929`	`G`	`GAT`	2bp_insertion	frameshift_variant	1	C8
`Chr3:8644929`	`G`	`GAT`	2bp_insertion	CDS_variant	1	C8
`Chr3:8645696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:8645941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B106,B5
`Chr3:8645950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:8645972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:8646073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr3:8646111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B72,C25,C40,D8
`Chr3:8646193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:8646224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:8646227`	`G`	`GT`	1bp_insertion	frameshift_variant	1	D11

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057802966.1

218 aa

109

218

F-box

LRR_At5g56370

PF00646 F-box 31-66 aa PF24758 LRR_At5g56370 162-217 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057802966.1`	Pfam	`PF00646`	F-box	Domain	31	66	4e-08	33.5	F-box domain
`XP_057802966.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	162	217	2.9e-06	27.8	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057946983.1
CCAATTAAAAGTATCCCTAAAAAGTATTTAAACCCAAACAGTCGAAAAACGAACCCTCTGCCTCCCGTACCAACGAACTGAATCGAAAATTGAAACTCAAAAAAAATTCATCAGCAAAATCTTTTTAAAATCTATTCGAAATTTAAATTCTGTATCTGTTATCAATTTGATCGGTAGAATTGAGGAGCAGACTTTTTTGAGGTAGAGGAACAGACTTTATTGATGGAGCACAAGGCGATATCCAGAAAACGAAAGAAAGA...

CDS

1 records

Download CDS FASTA

LOC131018259
ATGGAGCACAAGGCGATATCCAGAAAACGAAAGAAAGAGGAGGTGGGAATAGATGGTGCTAATAAAAAGCATAGGAGCGATAATGGTGGTATTGACAAGTTACCTAATGATGTACTAATCAACATTGTGTCTCGCATGAGCTTCAAGGAAGCCGTGAGGGCGAGTGTCCTTGCACGTAGATGGAGATGTCTGTGGAAGTTTTACCACGGGACTATGCGATTTGATGTTAGGGATATCTCCCCCAGAAACCTAATGGGAAT...

Protein

1 records

Download Protein FASTA

XP_057802966.1
MEHKAISRKRKKEEVGIDGANKKHRSDNGGIDKLPNDVLINIVSRMSFKEAVRASVLARRWRCLWKFYHGTMRFDVRDISPRNLMGIEKFKSCANTVMELHQGRDVEGVVVHLEGIVNGGLFQPMSRALDELVYFATHKEVQTLEVKLSLKFLNYRRYELPHVGWLKSPLPYSSLRALRLTHVDVTDEQVCYLLASCHSLEELCIRSANKLNNLRVVG

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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