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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000766

染色体: Chr03 坐标: 8760405-8773494 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000766
名称SmilChr03G000766
描述disease resistance RPP8-like protein 3
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向8760405 - 8773494 / -

ID 对照

NCBI Gene IDLOC131017385
GeneID131017385
locus_tag-
NCBI NameLOC131017385
原始查询SmilChr03G000766

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述disease resistance RPP8-like protein 3
产物disease resistance RPP8-like protein 3
ArabidopsisAT5G35450 (AT5G35450)
Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508]
identity=27.6; qcov=0.896; evalue=9.44e-53; confidence=low
RiceOs10g0358200
-
identity=26.2; qcov=0.953; evalue=1.81e-47; confidence=low
GOGO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG-
PfamPF00931 (NB-ARC); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131017385

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057802096.1
2 Cytoplasm 细胞质 0.20000 XP_057802096.1
3 Cytosol 细胞质基质 0.20000 XP_057802096.1
4 Nucleus 细胞核 0.00000 XP_057802096.1
5 Chromosome 染色体 0.00000 XP_057802096.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:8760743 C T EMS_canonical_SNV CDS_variant 4 A16,B83,C42,C49
Chr3:8760779 G A EMS_canonical_SNV CDS_variant 3 C14,C20,C24
Chr3:8760862 G A EMS_canonical_SNV CDS_variant 1 C52
Chr3:8760978 C T EMS_canonical_SNV CDS_variant 1 D11
Chr3:8760980 G A EMS_canonical_SNV CDS_variant 1 C52
Chr3:8760983 G A EMS_canonical_SNV CDS_variant 2 B114,C23
Chr3:8760994 C T EMS_canonical_SNV CDS_variant 2 C11,C18
Chr3:8761020 C T EMS_canonical_SNV CDS_variant 1 B68
Chr3:8761021 G A EMS_canonical_SNV CDS_variant 1 C20
Chr3:8761031 GTA G 2bp_deletion frameshift_variant 32 B104,B105,B111,B115,B120,B123,B128,B138,B140,B19,B40,B41,B53,B67,B77,B99,C17,C26,C30,C32,C33,C38,C44,C47,C57,C58,C68,C7,C75,C77,D10,D3
Chr3:8761066 TGG T 2bp_deletion frameshift_variant 1 B83
Chr3:8761066 TGG T 2bp_deletion CDS_variant 1 B83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802096.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802097.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802098.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802100.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802101.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802102.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802103.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802104.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
XP_057802105.1
828 aa
N
1
414
828
NB-ARC
LRR_14
C
PF00931 NB-ARC 142-295 aa PF23598 LRR_14 510-780 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802096.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802096.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802097.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802097.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802098.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802098.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802100.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802100.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802101.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802101.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802102.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802102.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802103.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802103.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802104.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802104.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region
XP_057802105.1 Pfam PF00931 NB-ARC Domain 142 295 2.9e-26 92.8 NB-ARC domain
XP_057802105.1 Pfam PF23598 LRR_14 Repeat 510 780 1.1e-27 97.5 Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057946122.1
TAGCTTTATGAATTTGTAGTTTATAATCCCTTCCAACTCTGCTTTGGGTTTCTCCAAAATATCAAACTCTACCCTCAAATCTCACGCTTAGCTGGCGAGACGAGCGAAGTTAAGGAGAGAGATCGGAAAGTCAATCGATACGAGCAAACATAAGAAGAAAATTCACAAAAATGGCGAAGTTGAGAAAAAGGAAAGATAAGAAGAAGAATAAAAGAAAAGATATCACATTTGATTTCACCCTTCAAATCAAGACGAGCTAA...
XM_057946117.1
TAGCTTTATGAATTTGTAGTTTATAATCCCTTCCAACTCTGCTTTGGGTTTCTCCAAAATATCAAACTCTACCCTCAAATCTCACGCTTAGCTGGCGAGACGAGCGAAGTTAAGGAGAGAGATCGGAAAGTCAATCGATACGAGCAAACATAAGAAGAAAATTCACAAAAATGATATCAAACTCTACCGTTCATATCACACACGCAGGCGAAGTTGAGAAAAAGGAAAGATAAGAAGAAGAATAAAAGAAAAGATATCAC...

CDS

9 records

下载 CDS FASTA
LOC131017385
ATGTCAGAGGCCCTCCTCTTATCGCTGATACAGAAGCTCGACATTAATTATGGAGAGGACACGAGAATAAAAGAGCAAATGGAGATGGTAATTAAAGAGATGAGAGAGATTGTGGATATTGTGAGGGATGAGAAATTGGAAGAGGGAAGAACCCTAAATTTTTTAGTATATGATCTTGTCGACGTGGCTGAGGATGCCCTCCACCTTTCCAAACAAAACGATGGGCATTATTGGAAGTATGATTCCATCCATAGTTGGAT...
LOC131017385
ATGTCAGAGGCCCTCCTCTTATCGCTGATACAGAAGCTCGACATTAATTATGGAGAGGACACGAGAATAAAAGAGCAAATGGAGATGGTAATTAAAGAGATGAGAGAGATTGTGGATATTGTGAGGGATGAGAAATTGGAAGAGGGAAGAACCCTAAATTTTTTAGTATATGATCTTGTCGACGTGGCTGAGGATGCCCTCCACCTTTCCAAACAAAACGATGGGCATTATTGGAAGTATGATTCCATCCATAGTTGGAT...

Protein

9 records

下载 Protein FASTA
XP_057802096.1
MSEALLLSLIQKLDINYGEDTRIKEQMEMVIKEMREIVDIVRDEKLEEGRTLNFLVYDLVDVAEDALHLSKQNDGHYWKYDSIHSWIGEIKERMLKLGDDGANINMRSSENVDDDKYVVGMEEQMEMLIRTRIIGGEGYWKALLIKGMSGIGKTTLAREIYNHPTVVERFERRRLWVSNVTHFTIKELLIKLIQQVEDPESLHTSSLLENMDNQSLRDMLRQHLRGMQYLIVLDDVPKQMHLKSFWAHLPQEFNGSRLLL...
XP_057802097.1
MSEALLLSLIQKLDINYGEDTRIKEQMEMVIKEMREIVDIVRDEKLEEGRTLNFLVYDLVDVAEDALHLSKQNDGHYWKYDSIHSWIGEIKERMLKLGDDGANINMRSSENVDDDKYVVGMEEQMEMLIRTRIIGGEGYWKALLIKGMSGIGKTTLAREIYNHPTVVERFERRRLWVSNVTHFTIKELLIKLIQQVEDPESLHTSSLLENMDNQSLRDMLRQHLRGMQYLIVLDDVPKQMHLKSFWAHLPQEFNGSRLLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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