Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000778`

染色体: Chr03 坐标: 8857216-8859576 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000778`
名称	SmilChr03G000778
描述	putative disease resistance protein At1g50180
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	8857216 - 8859576 / `-`

ID 对照

NCBI Gene ID	`LOC131017394`
GeneID	`131017394`
locus_tag	`-`
NCBI Name	`LOC131017394`
原始查询	`SmilChr03G000778`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g50180
产物	putative disease resistance protein At1g50180
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.1; qcov=0.946; evalue=2.65e-91; confidence=medium
Rice	`Os11g0633500` - identity=30.2; qcov=0.951; evalue=2.81e-62; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF24883 (NPHP3_N)
InterPro	-
eggNOG	-
NR	GeneID:131017394

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802114.1`
2	Nucleus	细胞核	0.00000	`XP_057802114.1`
3	Chromosome	染色体	0.00000	`XP_057802114.1`
4	Centromere	着丝粒	0.00000	`XP_057802114.1`
5	Chromatin	染色质	0.00000	`XP_057802114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:8857243`	`C`	`T`	EMS_canonical_SNV	stop_gained	16	B13,B130,B139,B15,B33,B43,B58,B63,B7,B78,B82,B91,C24,C31,C50,C52
`Chr3:8857280`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C24
`Chr3:8857280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:8857297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A14,C41
`Chr3:8857308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr3:8857321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:8857417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:8857437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:8857439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:8857451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr3:8857490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,B75
`Chr3:8857522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,A9,B50,B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802114.1

708 aa

354

708

Rx_N

AAA_16

NB-ARC

NPHP3_N

WHD_DRP

LRR_14

PF18052 Rx_N 5-83 aa PF13191 AAA_16 164-286 aa PF00931 NB-ARC 168-346 aa PF24883 NPHP3_N 177-286 aa PF23559 WHD_DRP 434-511 aa PF23598 LRR_14 573-680 aa

XP_057802115.1

575 aa

288

575

Rx_N

AAA_16

NB-ARC

NPHP3_N

WHD_DRP

PF18052 Rx_N 5-83 aa PF13191 AAA_16 164-286 aa PF00931 NB-ARC 168-346 aa PF24883 NPHP3_N 177-286 aa PF23559 WHD_DRP 434-511 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802114.1`	Pfam	`PF18052`	Rx_N	Domain	5	83	2e-18	67.0	Rx N-terminal domain
`XP_057802114.1`	Pfam	`PF13191`	AAA_16	Domain	164	286	3.1e-10	41.6	AAA ATPase domain
`XP_057802114.1`	Pfam	`PF00931`	NB-ARC	Domain	168	346	4.1e-36	124.9	NB-ARC domain
`XP_057802114.1`	Pfam	`PF24883`	NPHP3_N	Domain	177	286	4.1e-06	27.8	Nephrocystin 3, N-terminal
`XP_057802114.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	511	1.9e-12	47.7	Disease resistance protein Winged helix domain
`XP_057802114.1`	Pfam	`PF23598`	LRR_14	Repeat	573	680	1.4e-12	47.7	Leucine-rich repeat region
`XP_057802115.1`	Pfam	`PF18052`	Rx_N	Domain	5	83	1.2e-18	67.7	Rx N-terminal domain
`XP_057802115.1`	Pfam	`PF13191`	AAA_16	Domain	164	286	2.1e-10	42.1	AAA ATPase domain
`XP_057802115.1`	Pfam	`PF00931`	NB-ARC	Domain	168	346	2.7e-36	125.5	NB-ARC domain
`XP_057802115.1`	Pfam	`PF24883`	NPHP3_N	Domain	177	286	2.9e-06	28.3	Nephrocystin 3, N-terminal
`XP_057802115.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	511	1.6e-12	48.0	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946131.1
TTTCTCATAGAAATCTCCAAATCCTAATTTCTCTCTTCCAGAATCCAAATTCTTCGCATTCTCGATTGAAGAATTGTATTCACCACAACGAGTTCCTTATTCCTCTCTTTATATACTCTCACCAATAGTAAATTGATCGAGTTTGGAATTGTTGCGATGGCAGAAGCAGTGGTGTCGACTGCTCTAGCAACCTTGCGCAATTTGTTGGTGGAAGAAGCAAGGTTTTTGTATGGCGTGGGTGACAAAGTGAGGGAGCTCGA...

XM_057946132.1
TCATAGAAATCTCCAAATCCTAATTTCTCTCTTCCAGAATCCAAATTCTTCGCATTCTCGATTGAAGAATTGTATTCACCACAACGAGTTCCTTATTCCTCTCTTTATATACTCTCACCAATAGTAAATTGATCGAGTTTGGAATTGTTGCGATGGCAGAAGCAGTGGTGTCGACTGCTCTAGCAACCTTGCGCAATTTGTTGGTGGAAGAAGCAAGGTTTTTGTATGGCGTGGGTGACAAAGTGAGGGAGCTCGAGATC...

CDS

2 records

下载 CDS FASTA

LOC131017394
ATGGCAGAAGCAGTGGTGTCGACTGCTCTAGCAACCTTGCGCAATTTGTTGGTGGAAGAAGCAAGGTTTTTGTATGGCGTGGGTGACAAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTTCTCAAAGATGCCGATAGAAGACGACATGGAAGTGAAACCATTTTGAATTGGATCTCGGAGATCAAAGATCTTGTCTATAGAGCCGAAGCTGCCATTGAAAGACATGCAGCTTATCAAGTGTTGTCAAG...

Protein

2 records

下载 Protein FASTA

XP_057802114.1
MAEAVVSTALATLRNLLVEEARFLYGVGDKVRELEIQLKEMKCLLKDADRRRHGSETILNWISEIKDLVYRAEAAIERHAAYQVLSSRRRGLRQLIRRYSCILEEGCSLHQLASEISQIKYNLGRVTEAMRAYGIKNIIDRGESSSTDNRARKSFPEFEIGECFVGMEDELKQLGNLLRQDNEDRVISVWGMGGSGKTTIAKKLYNETKSSFDLCAWVCISQQCQSFQSVWNDVLKQLEHQSTKVVSDEPQQIREDVVPN...

XP_057802115.1
MAEAVVSTALATLRNLLVEEARFLYGVGDKVRELEIQLKEMKCLLKDADRRRHGSETILNWISEIKDLVYRAEAAIERHAAYQVLSSRRRGLRQLIRRYSCILEEGCSLHQLASEISQIKYNLGRVTEAMRAYGIKNIIDRGESSSTDNRARKSFPEFEIGECFVGMEDELKQLGNLLRQDNEDRVISVWGMGGSGKTTIAKKLYNETKSSFDLCAWVCISQQCQSFQSVWNDVLKQLEHQSTKVVSDEPQQIREDVVPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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