当前解析结果
SmilChr03G000786| 统一新 Gene ID | SmilChr03G000786 |
|---|---|
| 名称 | SmilChr03G000786 |
| 描述 | probable disease resistance protein RF9 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8949292 - 8949900 / - |
| NCBI Gene ID | LOC131018265 |
|---|---|
| GeneID | 131018265 |
| locus_tag | - |
| NCBI Name | LOC131018265 |
| 原始查询 | SmilChr03G000786 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein RF9 |
| 产物 | probable disease resistance protein RF9 |
| Arabidopsis | AT1G59218 (AT1G59218)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842234] identity=37.6; qcov=0.5; evalue=4.52e-14; confidence=low |
| Rice | Os10g0162846- identity=28.5; qcov=1.02; evalue=7.42e-13; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018265 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802971.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802971.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802971.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802971.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802971.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8949326 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | B41,B5,B65,B95,B98,C10,C64,C70,C9 |
Chr3:8949336 |
A |
AAG |
2bp_insertion | frameshift_variant | 2 | B52,B59 |
Chr3:8949336 |
A |
AAG |
2bp_insertion | CDS_variant | 2 | B52,B59 |
Chr3:8949341 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B52,B59 |
Chr3:8949341 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B52,B59 |
Chr3:8949415 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | D10,D11 |
Chr3:8949415 |
AG |
A |
1bp_deletion | CDS_variant | 2 | D10,D11 |
Chr3:8949427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B123,B19 |
Chr3:8949429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B62,B75,B76 |
Chr3:8949463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr3:8949498 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | A11,B14,B26,C28 |
Chr3:8949498 |
TC |
T |
1bp_deletion | CDS_variant | 4 | A11,B14,B26,C28 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。